Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC14.37□□□□□ -0.11
HOXA1P49639 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXA1P49639 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXA1P49639 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXA1P49639 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXA1P49639 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXA1P49639 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXA1P49639 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXA1P49639 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HOXA1P49639 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC14.37□□□□□ -0.11
HOXA1P49639 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXA1P49639 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC14.37□□□□□ -0.11
HOXA1P49639 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HOXA1P49639 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC14.37□□□□□ -0.11
HOXA1P49639 AL390955.1-201ENST00000428694 934 ntBASIC14.37□□□□□ -0.11
HOXA1P49639 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC14.37□□□□□ -0.11
HOXA1P49639 GXYLT1P6-201ENST00000456472 1187 ntBASIC14.37□□□□□ -0.11
HOXA1P49639 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HOXA1P49639 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HOXA1P49639 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC14.37□□□□□ -0.11
HOXA1P49639 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC14.37□□□□□ -0.11
HOXA1P49639 MIR4785-201ENST00000585005 73 ntBASIC14.37□□□□□ -0.11
HOXA1P49639 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC14.37□□□□□ -0.11
HOXA1P49639 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXA1P49639 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXA1P49639 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
HOXA1P49639 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
HOXA1P49639 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXA1P49639 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXA1P49639 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC14.37□□□□□ -0.11
HOXA1P49639 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC14.37□□□□□ -0.11
HOXA1P49639 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC14.37□□□□□ -0.11
HOXA1P49639 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
HOXA1P49639 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXA1P49639 GOLGA8DP-202ENST00000341390 2184 ntBASIC14.37□□□□□ -0.11
HOXA1P49639 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXA1P49639 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXA1P49639 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HOXA1P49639 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXA1P49639 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
HOXA1P49639 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC14.37□□□□□ -0.11
HOXA1P49639 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXA1P49639 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
HOXA1P49639 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXA1P49639 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC14.36□□□□□ -0.11
HOXA1P49639 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
HOXA1P49639 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXA1P49639 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC14.36□□□□□ -0.11
HOXA1P49639 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HOXA1P49639 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC14.36□□□□□ -0.11
HOXA1P49639 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC14.36□□□□□ -0.11
HOXA1P49639 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC14.36□□□□□ -0.11
HOXA1P49639 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HOXA1P49639 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HOXA1P49639 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC14.36□□□□□ -0.11
HOXA1P49639 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXA1P49639 PRR31-201ENST00000371629 978 ntTSL 2 BASIC14.36□□□□□ -0.11
HOXA1P49639 MIR718-201ENST00000390190 70 ntBASIC14.36□□□□□ -0.11
HOXA1P49639 AC007663.1-201ENST00000438948 1240 ntBASIC14.36□□□□□ -0.11
HOXA1P49639 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC14.36□□□□□ -0.11
HOXA1P49639 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC14.36□□□□□ -0.11
HOXA1P49639 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC14.36□□□□□ -0.11
HOXA1P49639 DHDH-203ENST00000522614 776 ntTSL 5 BASIC14.36□□□□□ -0.11
HOXA1P49639 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC14.36□□□□□ -0.11
HOXA1P49639 REEP1-209ENST00000541910 969 ntTSL 2 BASIC14.36□□□□□ -0.11
HOXA1P49639 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC14.36□□□□□ -0.11
HOXA1P49639 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
HOXA1P49639 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC14.36□□□□□ -0.11
HOXA1P49639 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXA1P49639 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXA1P49639 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXA1P49639 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
HOXA1P49639 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
HOXA1P49639 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXA1P49639 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC14.36□□□□□ -0.11
HOXA1P49639 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC14.36□□□□□ -0.11
HOXA1P49639 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC14.36□□□□□ -0.11
HOXA1P49639 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC14.36□□□□□ -0.11
HOXA1P49639 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
HOXA1P49639 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC14.36□□□□□ -0.11
HOXA1P49639 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HOXA1P49639 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXA1P49639 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXA1P49639 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXA1P49639 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC14.36□□□□□ -0.11
HOXA1P49639 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXA1P49639 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXA1P49639 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXA1P49639 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXA1P49639 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXA1P49639 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC14.35□□□□□ -0.11
HOXA1P49639 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXA1P49639 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
HOXA1P49639 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HOXA1P49639 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HOXA1P49639 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXA1P49639 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
HOXA1P49639 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXA1P49639 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HOXA1P49639 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms