Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CCNFP41002 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCNFP41002 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC17.37■□□□□ 0.37
CCNFP41002 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC17.37■□□□□ 0.37
CCNFP41002 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCNFP41002 TBC1D3P5-201ENST00000579401 1545 ntBASIC17.37■□□□□ 0.37
CCNFP41002 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC17.37■□□□□ 0.37
CCNFP41002 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CCNFP41002 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCNFP41002 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCNFP41002 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC17.37■□□□□ 0.37
CCNFP41002 RNF216P1-203ENST00000404404 2427 ntBASIC17.37■□□□□ 0.37
CCNFP41002 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
CCNFP41002 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CCNFP41002 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CCNFP41002 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCNFP41002 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
CCNFP41002 PPIH-202ENST00000372549 327 ntTSL 3 BASIC17.37■□□□□ 0.37
CCNFP41002 COX5BP2-201ENST00000392354 334 ntBASIC17.37■□□□□ 0.37
CCNFP41002 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC17.37■□□□□ 0.37
CCNFP41002 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CCNFP41002 TPSP2-201ENST00000561760 610 ntBASIC17.37■□□□□ 0.37
CCNFP41002 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
CCNFP41002 NPAP1P7-201ENST00000613027 823 ntBASIC17.37■□□□□ 0.37
CCNFP41002 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
CCNFP41002 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CCNFP41002 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC17.37■□□□□ 0.37
CCNFP41002 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CCNFP41002 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC17.37■□□□□ 0.37
CCNFP41002 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCNFP41002 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCNFP41002 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
CCNFP41002 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
CCNFP41002 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCNFP41002 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCNFP41002 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCNFP41002 AC010460.3-201ENST00000511359 1579 ntBASIC17.36■□□□□ 0.37
CCNFP41002 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCNFP41002 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
CCNFP41002 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCNFP41002 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCNFP41002 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCNFP41002 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
CCNFP41002 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC17.36■□□□□ 0.37
CCNFP41002 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCNFP41002 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC17.36■□□□□ 0.37
CCNFP41002 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
CCNFP41002 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC17.36■□□□□ 0.37
CCNFP41002 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCNFP41002 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCNFP41002 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCNFP41002 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCNFP41002 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCNFP41002 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCNFP41002 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCNFP41002 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCNFP41002 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCNFP41002 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC17.36■□□□□ 0.37
CCNFP41002 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC17.36■□□□□ 0.37
CCNFP41002 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC17.36■□□□□ 0.37
CCNFP41002 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCNFP41002 ABR-204ENST00000543210 1049 ntTSL 2 BASIC17.36■□□□□ 0.37
CCNFP41002 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
CCNFP41002 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC17.36■□□□□ 0.37
CCNFP41002 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC17.36■□□□□ 0.37
CCNFP41002 ABR-217ENST00000572441 563 ntTSL 4 BASIC17.36■□□□□ 0.37
CCNFP41002 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC17.36■□□□□ 0.37
CCNFP41002 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCNFP41002 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
CCNFP41002 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC17.36■□□□□ 0.37
CCNFP41002 AC093458.2-201ENST00000623150 629 ntBASIC17.36■□□□□ 0.37
CCNFP41002 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
CCNFP41002 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCNFP41002 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC17.36■□□□□ 0.37
CCNFP41002 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC17.36■□□□□ 0.37
CCNFP41002 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCNFP41002 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCNFP41002 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC17.36■□□□□ 0.37
CCNFP41002 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCNFP41002 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCNFP41002 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCNFP41002 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC17.36■□□□□ 0.37
CCNFP41002 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
CCNFP41002 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCNFP41002 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCNFP41002 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCNFP41002 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCNFP41002 LINC00554-201ENST00000564841 3011 ntBASIC17.35■□□□□ 0.37
CCNFP41002 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
CCNFP41002 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC17.35■□□□□ 0.37
CCNFP41002 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.35■□□□□ 0.37
CCNFP41002 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCNFP41002 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCNFP41002 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCNFP41002 AL845331.1-201ENST00000424978 1190 ntBASIC17.35■□□□□ 0.37
CCNFP41002 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCNFP41002 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC17.35■□□□□ 0.37
CCNFP41002 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC17.35■□□□□ 0.37
CCNFP41002 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCNFP41002 AC019129.2-201ENST00000609837 1235 ntBASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms