Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGA1P17096 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HMGA1P17096 AC067852.2-201ENST00000590513 2313 ntBASIC17.76■□□□□ 0.43
HMGA1P17096 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGA1P17096 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGA1P17096 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
HMGA1P17096 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGA1P17096 AC018470.1-201ENST00000624790 3129 ntBASIC17.76■□□□□ 0.43
HMGA1P17096 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGA1P17096 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGA1P17096 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC17.76■□□□□ 0.43
HMGA1P17096 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC17.76■□□□□ 0.43
HMGA1P17096 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC17.76■□□□□ 0.43
HMGA1P17096 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC17.76■□□□□ 0.43
HMGA1P17096 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC17.76■□□□□ 0.43
HMGA1P17096 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
HMGA1P17096 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC17.76■□□□□ 0.43
HMGA1P17096 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC17.76■□□□□ 0.43
HMGA1P17096 AL355385.1-201ENST00000606123 409 ntBASIC17.76■□□□□ 0.43
HMGA1P17096 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HMGA1P17096 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGA1P17096 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGA1P17096 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC17.76■□□□□ 0.43
HMGA1P17096 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
HMGA1P17096 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGA1P17096 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HMGA1P17096 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC17.76■□□□□ 0.43
HMGA1P17096 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGA1P17096 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HMGA1P17096 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
HMGA1P17096 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
HMGA1P17096 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HMGA1P17096 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC17.75■□□□□ 0.43
HMGA1P17096 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
HMGA1P17096 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC17.75■□□□□ 0.43
HMGA1P17096 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGA1P17096 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HMGA1P17096 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC17.75■□□□□ 0.43
HMGA1P17096 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC17.75■□□□□ 0.43
HMGA1P17096 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
HMGA1P17096 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGA1P17096 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
HMGA1P17096 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC17.75■□□□□ 0.43
HMGA1P17096 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HMGA1P17096 AL139400.1-201ENST00000366220 510 ntBASIC17.75■□□□□ 0.43
HMGA1P17096 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGA1P17096 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC17.75■□□□□ 0.43
HMGA1P17096 AL355306.1-201ENST00000415580 579 ntBASIC17.75■□□□□ 0.43
HMGA1P17096 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC17.75■□□□□ 0.43
HMGA1P17096 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC17.75■□□□□ 0.43
HMGA1P17096 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
HMGA1P17096 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HMGA1P17096 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC17.75■□□□□ 0.43
HMGA1P17096 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC17.75■□□□□ 0.43
HMGA1P17096 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC17.75■□□□□ 0.43
HMGA1P17096 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC17.75■□□□□ 0.43
HMGA1P17096 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC17.75■□□□□ 0.43
HMGA1P17096 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGA1P17096 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
HMGA1P17096 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
HMGA1P17096 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGA1P17096 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGA1P17096 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGA1P17096 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGA1P17096 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
HMGA1P17096 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGA1P17096 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HMGA1P17096 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
HMGA1P17096 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HMGA1P17096 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGA1P17096 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC17.74■□□□□ 0.43
HMGA1P17096 FRMD8P1-201ENST00000440433 1524 ntBASIC17.74■□□□□ 0.43
HMGA1P17096 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC17.74■□□□□ 0.43
HMGA1P17096 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC17.74■□□□□ 0.43
HMGA1P17096 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HMGA1P17096 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGA1P17096 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGA1P17096 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
HMGA1P17096 PON3-203ENST00000427422 894 ntTSL 3 BASIC17.74■□□□□ 0.43
HMGA1P17096 HMGN1P19-201ENST00000436976 333 ntBASIC17.74■□□□□ 0.43
HMGA1P17096 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGA1P17096 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
HMGA1P17096 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
HMGA1P17096 AC004835.2-201ENST00000603762 682 ntBASIC17.74■□□□□ 0.43
HMGA1P17096 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC17.74■□□□□ 0.43
HMGA1P17096 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17.74■□□□□ 0.43
HMGA1P17096 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
HMGA1P17096 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HMGA1P17096 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC17.74■□□□□ 0.43
HMGA1P17096 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGA1P17096 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGA1P17096 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC17.74■□□□□ 0.43
HMGA1P17096 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HMGA1P17096 AL353732.1-201ENST00000569618 1459 ntBASIC17.74■□□□□ 0.43
HMGA1P17096 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGA1P17096 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HMGA1P17096 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGA1P17096 SLC22A20-204ENST00000530038 1673 ntBASIC17.74■□□□□ 0.43
HMGA1P17096 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.73■□□□□ 0.43
HMGA1P17096 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 66.9 ms