Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HMGB1P09429 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HMGB1P09429 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HMGB1P09429 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC20.33■□□□□ 0.85
HMGB1P09429 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HMGB1P09429 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
HMGB1P09429 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
HMGB1P09429 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
HMGB1P09429 PCDHA12-202ENST00000613593 2588 ntBASIC20.33■□□□□ 0.85
HMGB1P09429 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HMGB1P09429 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HMGB1P09429 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
HMGB1P09429 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
HMGB1P09429 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
HMGB1P09429 SAPCD2P3-201ENST00000455031 850 ntBASIC20.33■□□□□ 0.85
HMGB1P09429 FGFR3P6-201ENST00000457012 610 ntBASIC20.33■□□□□ 0.85
HMGB1P09429 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HMGB1P09429 AL353135.1-201ENST00000606729 504 ntBASIC20.33■□□□□ 0.85
HMGB1P09429 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HMGB1P09429 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
HMGB1P09429 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
HMGB1P09429 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
HMGB1P09429 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
HMGB1P09429 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
HMGB1P09429 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC20.33■□□□□ 0.84
HMGB1P09429 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
HMGB1P09429 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC20.33■□□□□ 0.84
HMGB1P09429 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HMGB1P09429 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HMGB1P09429 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HMGB1P09429 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HMGB1P09429 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
HMGB1P09429 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
HMGB1P09429 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HMGB1P09429 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
HMGB1P09429 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC20.32■□□□□ 0.84
HMGB1P09429 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HMGB1P09429 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HMGB1P09429 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HMGB1P09429 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HMGB1P09429 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HMGB1P09429 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HMGB1P09429 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HMGB1P09429 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC20.32■□□□□ 0.84
HMGB1P09429 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
HMGB1P09429 KRT18P56-201ENST00000507275 550 ntBASIC20.32■□□□□ 0.84
HMGB1P09429 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC20.32■□□□□ 0.84
HMGB1P09429 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC20.32■□□□□ 0.84
HMGB1P09429 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC20.32■□□□□ 0.84
HMGB1P09429 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
HMGB1P09429 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HMGB1P09429 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC20.32■□□□□ 0.84
HMGB1P09429 AC009053.2-201ENST00000563701 2365 ntBASIC20.32■□□□□ 0.84
HMGB1P09429 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
HMGB1P09429 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC20.32■□□□□ 0.84
HMGB1P09429 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC20.32■□□□□ 0.84
HMGB1P09429 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
HMGB1P09429 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HMGB1P09429 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC20.32■□□□□ 0.84
HMGB1P09429 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
HMGB1P09429 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC20.32■□□□□ 0.84
HMGB1P09429 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HMGB1P09429 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC20.31■□□□□ 0.84
HMGB1P09429 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HMGB1P09429 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HMGB1P09429 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HMGB1P09429 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HMGB1P09429 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
HMGB1P09429 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC20.31■□□□□ 0.84
HMGB1P09429 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HMGB1P09429 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HMGB1P09429 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HMGB1P09429 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
HMGB1P09429 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC20.31■□□□□ 0.84
HMGB1P09429 IRF8-202ENST00000562492 946 ntTSL 3 BASIC20.31■□□□□ 0.84
HMGB1P09429 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HMGB1P09429 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC20.31■□□□□ 0.84
HMGB1P09429 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HMGB1P09429 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
HMGB1P09429 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
HMGB1P09429 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HMGB1P09429 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HMGB1P09429 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HMGB1P09429 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
HMGB1P09429 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HMGB1P09429 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC20.3■□□□□ 0.84
HMGB1P09429 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC20.3■□□□□ 0.84
HMGB1P09429 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HMGB1P09429 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HMGB1P09429 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HMGB1P09429 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HMGB1P09429 AC105020.1-201ENST00000435356 2205 ntBASIC20.3■□□□□ 0.84
HMGB1P09429 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
HMGB1P09429 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC20.3■□□□□ 0.84
HMGB1P09429 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
HMGB1P09429 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC20.3■□□□□ 0.84
HMGB1P09429 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC20.3■□□□□ 0.84
HMGB1P09429 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HMGB1P09429 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
HMGB1P09429 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms