Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HOXD4P09016 AC092850.2-201ENST00000623821 2697 ntBASIC15.68■□□□□ 0.1
HOXD4P09016 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXD4P09016 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXD4P09016 NCF1C-201ENST00000438382 1427 ntBASIC15.68■□□□□ 0.1
HOXD4P09016 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HOXD4P09016 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC15.68■□□□□ 0.1
HOXD4P09016 POR-209ENST00000439269 1858 ntTSL 2 BASIC15.67■□□□□ 0.1
HOXD4P09016 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC15.67■□□□□ 0.1
HOXD4P09016 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
HOXD4P09016 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXD4P09016 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
HOXD4P09016 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC15.67■□□□□ 0.1
HOXD4P09016 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXD4P09016 PCDH8P1-201ENST00000428983 2773 ntBASIC15.67■□□□□ 0.1
HOXD4P09016 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
HOXD4P09016 NKILA-202ENST00000614771 2598 ntBASIC15.67■□□□□ 0.1
HOXD4P09016 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC15.67■□□□□ 0.1
HOXD4P09016 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXD4P09016 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXD4P09016 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXD4P09016 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC15.67■□□□□ 0.1
HOXD4P09016 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC15.67■□□□□ 0.1
HOXD4P09016 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HOXD4P09016 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HOXD4P09016 NMU-202ENST00000505262 693 ntTSL 3 BASIC15.67■□□□□ 0.1
HOXD4P09016 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC15.67■□□□□ 0.1
HOXD4P09016 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC15.67■□□□□ 0.1
HOXD4P09016 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC15.67■□□□□ 0.1
HOXD4P09016 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC15.67■□□□□ 0.1
HOXD4P09016 AC040169.1-201ENST00000565382 521 ntBASIC15.67■□□□□ 0.1
HOXD4P09016 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
HOXD4P09016 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC15.67■□□□□ 0.1
HOXD4P09016 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC15.67■□□□□ 0.1
HOXD4P09016 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXD4P09016 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC15.67■□□□□ 0.1
HOXD4P09016 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
HOXD4P09016 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC15.67■□□□□ 0.1
HOXD4P09016 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
HOXD4P09016 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC15.67■□□□□ 0.1
HOXD4P09016 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXD4P09016 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXD4P09016 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXD4P09016 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXD4P09016 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HOXD4P09016 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
HOXD4P09016 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXD4P09016 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HOXD4P09016 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC15.67■□□□□ 0.1
HOXD4P09016 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXD4P09016 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HOXD4P09016 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXD4P09016 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
HOXD4P09016 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
HOXD4P09016 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
HOXD4P09016 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HOXD4P09016 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC15.66■□□□□ 0.1
HOXD4P09016 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HOXD4P09016 AP002414.3-201ENST00000589352 1468 ntBASIC15.66■□□□□ 0.1
HOXD4P09016 AC011676.5-201ENST00000624864 2660 ntBASIC15.66■□□□□ 0.1
HOXD4P09016 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HOXD4P09016 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HOXD4P09016 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HOXD4P09016 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
HOXD4P09016 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
HOXD4P09016 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
HOXD4P09016 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HOXD4P09016 BEX3-201ENST00000361298 921 ntTSL 2 BASIC15.66■□□□□ 0.1
HOXD4P09016 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HOXD4P09016 RPSAP43-201ENST00000402237 625 ntBASIC15.66■□□□□ 0.1
HOXD4P09016 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC15.66■□□□□ 0.1
HOXD4P09016 DNAJB3-201ENST00000446806 729 ntBASIC15.66■□□□□ 0.1
HOXD4P09016 ARTN-206ENST00000472435 402 ntTSL 3 BASIC15.66■□□□□ 0.1
HOXD4P09016 MIR3687-2-201ENST00000577708 61 ntBASIC15.66■□□□□ 0.1
HOXD4P09016 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC15.66■□□□□ 0.1
HOXD4P09016 SDCCAG3P1-201ENST00000589292 1150 ntBASIC15.66■□□□□ 0.1
HOXD4P09016 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HOXD4P09016 MIR3687-1-201ENST00000614492 61 ntBASIC15.66■□□□□ 0.1
HOXD4P09016 AC004706.3-202ENST00000621574 984 ntBASIC15.66■□□□□ 0.1
HOXD4P09016 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC15.66■□□□□ 0.1
HOXD4P09016 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HOXD4P09016 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HOXD4P09016 FUT8-AS1-201ENST00000621019 1521 ntBASIC15.66■□□□□ 0.1
HOXD4P09016 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
HOXD4P09016 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
HOXD4P09016 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HOXD4P09016 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC15.66■□□□□ 0.1
HOXD4P09016 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HOXD4P09016 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HOXD4P09016 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC15.66■□□□□ 0.1
HOXD4P09016 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HOXD4P09016 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
HOXD4P09016 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HOXD4P09016 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HOXD4P09016 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HOXD4P09016 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC15.66■□□□□ 0.1
HOXD4P09016 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
HOXD4P09016 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC15.66■□□□□ 0.1
HOXD4P09016 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
HOXD4P09016 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 215.1 ms