Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC17.39■□□□□ 0.37
VIMP08670 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VIMP08670 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.39■□□□□ 0.37
VIMP08670 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
VIMP08670 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VIMP08670 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VIMP08670 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
VIMP08670 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
VIMP08670 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
VIMP08670 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
VIMP08670 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC17.38■□□□□ 0.37
VIMP08670 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VIMP08670 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VIMP08670 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC17.38■□□□□ 0.37
VIMP08670 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC17.38■□□□□ 0.37
VIMP08670 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
VIMP08670 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC17.38■□□□□ 0.37
VIMP08670 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VIMP08670 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC17.38■□□□□ 0.37
VIMP08670 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VIMP08670 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VIMP08670 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
VIMP08670 BX276092.7-203ENST00000637198 1536 ntBASIC17.38■□□□□ 0.37
VIMP08670 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC17.38■□□□□ 0.37
VIMP08670 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
VIMP08670 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
VIMP08670 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VIMP08670 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
VIMP08670 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC17.38■□□□□ 0.37
VIMP08670 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC17.38■□□□□ 0.37
VIMP08670 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.38■□□□□ 0.37
VIMP08670 WWOX-216ENST00000569818 525 ntBASIC17.38■□□□□ 0.37
VIMP08670 AF186192.3-201ENST00000583427 947 ntBASIC17.38■□□□□ 0.37
VIMP08670 CYGB-204ENST00000589342 815 ntTSL 3 BASIC17.38■□□□□ 0.37
VIMP08670 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC17.38■□□□□ 0.37
VIMP08670 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VIMP08670 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VIMP08670 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC17.38■□□□□ 0.37
VIMP08670 AC023824.1-201ENST00000562945 2975 ntBASIC17.38■□□□□ 0.37
VIMP08670 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
VIMP08670 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VIMP08670 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
VIMP08670 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
VIMP08670 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.38■□□□□ 0.37
VIMP08670 KRT8P9-201ENST00000558927 1449 ntBASIC17.38■□□□□ 0.37
VIMP08670 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VIMP08670 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VIMP08670 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VIMP08670 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC17.37■□□□□ 0.37
VIMP08670 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VIMP08670 AC005052.1-201ENST00000625181 2492 ntBASIC17.37■□□□□ 0.37
VIMP08670 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
VIMP08670 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC17.37■□□□□ 0.37
VIMP08670 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC17.37■□□□□ 0.37
VIMP08670 AC005104.2-201ENST00000427818 678 ntBASIC17.37■□□□□ 0.37
VIMP08670 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VIMP08670 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VIMP08670 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC17.37■□□□□ 0.37
VIMP08670 FDX2-206ENST00000492239 773 ntTSL 2 BASIC17.37■□□□□ 0.37
VIMP08670 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC17.37■□□□□ 0.37
VIMP08670 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC17.37■□□□□ 0.37
VIMP08670 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC17.37■□□□□ 0.37
VIMP08670 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VIMP08670 AL139327.4-201ENST00000612362 153 ntBASIC17.37■□□□□ 0.37
VIMP08670 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC17.37■□□□□ 0.37
VIMP08670 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VIMP08670 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VIMP08670 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.37■□□□□ 0.37
VIMP08670 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VIMP08670 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VIMP08670 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VIMP08670 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VIMP08670 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC17.37■□□□□ 0.37
VIMP08670 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VIMP08670 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
VIMP08670 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VIMP08670 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VIMP08670 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
VIMP08670 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VIMP08670 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC17.36■□□□□ 0.37
VIMP08670 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC17.36■□□□□ 0.37
VIMP08670 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VIMP08670 DBET-201ENST00000630918 3363 ntBASIC17.36■□□□□ 0.37
VIMP08670 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC17.36■□□□□ 0.37
VIMP08670 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC17.36■□□□□ 0.37
VIMP08670 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VIMP08670 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VIMP08670 SLC25A1P3-201ENST00000395415 828 ntBASIC17.36■□□□□ 0.37
VIMP08670 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC17.36■□□□□ 0.37
VIMP08670 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC17.36■□□□□ 0.37
VIMP08670 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VIMP08670 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC17.36■□□□□ 0.37
VIMP08670 RPS15-203ENST00000586096 570 ntTSL 2 BASIC17.36■□□□□ 0.37
VIMP08670 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VIMP08670 SLC9A7P1-201ENST00000554295 3311 ntBASIC17.36■□□□□ 0.37
VIMP08670 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC17.36■□□□□ 0.37
VIMP08670 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.36■□□□□ 0.37
VIMP08670 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VIMP08670 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VIMP08670 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms