Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A1P02462 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A1P02462 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC20.85■□□□□ 0.93
COL4A1P02462 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A1P02462 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A1P02462 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
COL4A1P02462 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A1P02462 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC20.85■□□□□ 0.93
COL4A1P02462 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC20.85■□□□□ 0.93
COL4A1P02462 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC20.85■□□□□ 0.93
COL4A1P02462 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A1P02462 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC20.85■□□□□ 0.93
COL4A1P02462 GATD1-206ENST00000526325 756 ntTSL 5 BASIC20.85■□□□□ 0.93
COL4A1P02462 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC20.85■□□□□ 0.93
COL4A1P02462 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
COL4A1P02462 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A1P02462 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
COL4A1P02462 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC20.85■□□□□ 0.93
COL4A1P02462 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A1P02462 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A1P02462 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC20.85■□□□□ 0.93
COL4A1P02462 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A1P02462 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A1P02462 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A1P02462 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A1P02462 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC20.84■□□□□ 0.93
COL4A1P02462 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL4A1P02462 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
COL4A1P02462 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC20.84■□□□□ 0.93
COL4A1P02462 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL4A1P02462 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL4A1P02462 HNRNPFP1-201ENST00000391730 1133 ntBASIC20.84■□□□□ 0.93
COL4A1P02462 KLF2P3-201ENST00000451977 1087 ntBASIC20.84■□□□□ 0.93
COL4A1P02462 MTRF1LP2-201ENST00000506027 1122 ntBASIC20.84■□□□□ 0.93
COL4A1P02462 AL512356.2-201ENST00000546955 174 ntBASIC20.84■□□□□ 0.93
COL4A1P02462 DUT-210ENST00000559935 569 ntTSL 3 BASIC20.84■□□□□ 0.93
COL4A1P02462 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL4A1P02462 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC20.84■□□□□ 0.93
COL4A1P02462 WASH6P-202ENST00000359512 1437 ntBASIC20.84■□□□□ 0.93
COL4A1P02462 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC20.84■□□□□ 0.93
COL4A1P02462 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL4A1P02462 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL4A1P02462 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL4A1P02462 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
COL4A1P02462 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC20.84■□□□□ 0.93
COL4A1P02462 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
COL4A1P02462 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC20.83■□□□□ 0.93
COL4A1P02462 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL4A1P02462 RPL30-202ENST00000396070 440 ntTSL 2 BASIC20.83■□□□□ 0.93
COL4A1P02462 AC236430.1-201ENST00000402231 743 ntBASIC20.83■□□□□ 0.93
COL4A1P02462 AC092474.2-201ENST00000424288 719 ntBASIC20.83■□□□□ 0.93
COL4A1P02462 FAM86C2P-203ENST00000528684 1004 ntBASIC20.83■□□□□ 0.93
COL4A1P02462 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
COL4A1P02462 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC20.83■□□□□ 0.93
COL4A1P02462 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
COL4A1P02462 AC138761.1-201ENST00000584393 385 ntBASIC20.83■□□□□ 0.93
COL4A1P02462 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL4A1P02462 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC20.83■□□□□ 0.93
COL4A1P02462 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC20.83■□□□□ 0.93
COL4A1P02462 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL4A1P02462 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
COL4A1P02462 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
COL4A1P02462 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
COL4A1P02462 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
COL4A1P02462 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
COL4A1P02462 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC20.83■□□□□ 0.92
COL4A1P02462 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC20.83■□□□□ 0.92
COL4A1P02462 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC20.83■□□□□ 0.92
COL4A1P02462 GSAP-205ENST00000430584 600 ntTSL 5 BASIC20.83■□□□□ 0.92
COL4A1P02462 CNN2P2-201ENST00000443536 909 ntBASIC20.83■□□□□ 0.92
COL4A1P02462 CNN2P3-201ENST00000450201 906 ntBASIC20.83■□□□□ 0.92
COL4A1P02462 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC20.83■□□□□ 0.92
COL4A1P02462 AP000842.3-202ENST00000569238 1080 ntBASIC20.83■□□□□ 0.92
COL4A1P02462 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.92
COL4A1P02462 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC20.83■□□□□ 0.92
COL4A1P02462 AL136317.3-201ENST00000618497 906 ntBASIC20.83■□□□□ 0.92
COL4A1P02462 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
COL4A1P02462 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
COL4A1P02462 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
COL4A1P02462 AC134043.2-201ENST00000624206 2238 ntBASIC20.82■□□□□ 0.92
COL4A1P02462 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC20.82■□□□□ 0.92
COL4A1P02462 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL4A1P02462 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
COL4A1P02462 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
COL4A1P02462 STX3-203ENST00000529177 1571 ntTSL 2 BASIC20.82■□□□□ 0.92
COL4A1P02462 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
COL4A1P02462 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL4A1P02462 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL4A1P02462 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC20.82■□□□□ 0.92
COL4A1P02462 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL4A1P02462 MRPS18AP1-201ENST00000414458 589 ntBASIC20.82■□□□□ 0.92
COL4A1P02462 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC20.82■□□□□ 0.92
COL4A1P02462 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL4A1P02462 AC125807.1-201ENST00000483097 614 ntBASIC20.82■□□□□ 0.92
COL4A1P02462 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
COL4A1P02462 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC20.82■□□□□ 0.92
COL4A1P02462 SLC25A39P2-201ENST00000537614 270 ntBASIC20.82■□□□□ 0.92
COL4A1P02462 AL138918.1-201ENST00000568306 659 ntBASIC20.82■□□□□ 0.92
COL4A1P02462 MIR3909-201ENST00000579518 119 ntBASIC20.82■□□□□ 0.92
COL4A1P02462 AL390754.1-201ENST00000619088 582 ntBASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms