Protein–RNA interactions for Protein: O95628

CNOT4, CCR4-NOT transcription complex subunit 4, humanhuman

Known RBP Predictions only

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4O95628 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CNOT4O95628 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
CNOT4O95628 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CNOT4O95628 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CNOT4O95628 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CNOT4O95628 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CNOT4O95628 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CNOT4O95628 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CNOT4O95628 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
CNOT4O95628 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CNOT4O95628 INIP-202ENST00000374236 874 ntTSL 2 BASIC15.36■□□□□ 0.05
CNOT4O95628 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CNOT4O95628 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CNOT4O95628 MIR940-201ENST00000401276 94 ntBASIC15.36■□□□□ 0.05
CNOT4O95628 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CNOT4O95628 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC15.36■□□□□ 0.05
CNOT4O95628 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC15.36■□□□□ 0.05
CNOT4O95628 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CNOT4O95628 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CNOT4O95628 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC15.36■□□□□ 0.05
CNOT4O95628 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
CNOT4O95628 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC15.36■□□□□ 0.05
CNOT4O95628 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC15.36■□□□□ 0.05
CNOT4O95628 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC15.36■□□□□ 0.05
CNOT4O95628 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC15.36■□□□□ 0.05
CNOT4O95628 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC15.36■□□□□ 0.05
CNOT4O95628 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC15.36■□□□□ 0.05
CNOT4O95628 AC148477.8-201ENST00000624298 468 ntBASIC15.36■□□□□ 0.05
CNOT4O95628 PGM5P2-202ENST00000637225 1043 ntBASIC15.36■□□□□ 0.05
CNOT4O95628 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CNOT4O95628 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC15.36■□□□□ 0.05
CNOT4O95628 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CNOT4O95628 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
CNOT4O95628 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC15.36■□□□□ 0.05
CNOT4O95628 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CNOT4O95628 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CNOT4O95628 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CNOT4O95628 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC15.35■□□□□ 0.05
CNOT4O95628 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC15.35■□□□□ 0.05
CNOT4O95628 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CNOT4O95628 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC15.35■□□□□ 0.05
CNOT4O95628 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CNOT4O95628 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC15.35■□□□□ 0.05
CNOT4O95628 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
CNOT4O95628 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC15.35■□□□□ 0.05
CNOT4O95628 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
CNOT4O95628 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC15.35■□□□□ 0.05
CNOT4O95628 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC15.35■□□□□ 0.05
CNOT4O95628 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC15.35■□□□□ 0.05
CNOT4O95628 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC15.35■□□□□ 0.05
CNOT4O95628 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC15.35■□□□□ 0.05
CNOT4O95628 AC092183.1-201ENST00000469884 875 ntBASIC15.35■□□□□ 0.05
CNOT4O95628 BX005266.1-201ENST00000473402 457 ntBASIC15.35■□□□□ 0.05
CNOT4O95628 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC15.35■□□□□ 0.05
CNOT4O95628 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CNOT4O95628 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CNOT4O95628 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC15.35■□□□□ 0.05
CNOT4O95628 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC15.35■□□□□ 0.05
CNOT4O95628 AC008764.6-201ENST00000595909 2069 ntBASIC15.35■□□□□ 0.05
CNOT4O95628 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
CNOT4O95628 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CNOT4O95628 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.35■□□□□ 0.05
CNOT4O95628 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CNOT4O95628 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC15.35■□□□□ 0.05
CNOT4O95628 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC15.35■□□□□ 0.05
CNOT4O95628 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CNOT4O95628 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
CNOT4O95628 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CNOT4O95628 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CNOT4O95628 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CNOT4O95628 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CNOT4O95628 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC15.35■□□□□ 0.05
CNOT4O95628 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CNOT4O95628 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CNOT4O95628 AC011270.2-201ENST00000624293 2550 ntBASIC15.34■□□□□ 0.05
CNOT4O95628 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
CNOT4O95628 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
CNOT4O95628 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CNOT4O95628 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CNOT4O95628 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CNOT4O95628 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CNOT4O95628 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CNOT4O95628 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
CNOT4O95628 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CNOT4O95628 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
CNOT4O95628 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CNOT4O95628 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CNOT4O95628 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC15.34■□□□□ 0.05
CNOT4O95628 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
CNOT4O95628 FABP5-202ENST00000396359 986 ntTSL 5 BASIC15.34■□□□□ 0.05
CNOT4O95628 BX842568.4-201ENST00000421222 227 ntBASIC15.34■□□□□ 0.05
CNOT4O95628 ACTG1P4-201ENST00000425123 1122 ntBASIC15.34■□□□□ 0.05
CNOT4O95628 RPS2P1-201ENST00000434010 821 ntBASIC15.34■□□□□ 0.05
CNOT4O95628 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC15.34■□□□□ 0.05
CNOT4O95628 HNRNPDP1-201ENST00000439535 754 ntBASIC15.34■□□□□ 0.05
CNOT4O95628 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CNOT4O95628 RPL13AP23-201ENST00000480739 586 ntBASIC15.34■□□□□ 0.05
CNOT4O95628 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC15.34■□□□□ 0.05
CNOT4O95628 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC15.34■□□□□ 0.05
CNOT4O95628 ETFA-208ENST00000559602 792 ntTSL 3 BASIC15.34■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 64.7 ms