Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1BO60663 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1BO60663 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1BO60663 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1BO60663 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC15.19■□□□□ 0.02
LMX1BO60663 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1BO60663 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC15.19■□□□□ 0.02
LMX1BO60663 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC15.19■□□□□ 0.02
LMX1BO60663 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1BO60663 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
LMX1BO60663 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1BO60663 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1BO60663 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1BO60663 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1BO60663 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC15.19■□□□□ 0.02
LMX1BO60663 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC15.19■□□□□ 0.02
LMX1BO60663 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1BO60663 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC15.19■□□□□ 0.02
LMX1BO60663 TEX30-205ENST00000376029 959 ntTSL 2 BASIC15.19■□□□□ 0.02
LMX1BO60663 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1BO60663 AL590627.1-203ENST00000421194 1026 ntBASIC15.19■□□□□ 0.02
LMX1BO60663 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
LMX1BO60663 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC15.19■□□□□ 0.02
LMX1BO60663 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1BO60663 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC15.19■□□□□ 0.02
LMX1BO60663 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC15.19■□□□□ 0.02
LMX1BO60663 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1BO60663 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC15.19■□□□□ 0.02
LMX1BO60663 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1BO60663 BX640515.1-201ENST00000617215 977 ntBASIC15.19■□□□□ 0.02
LMX1BO60663 AC117500.6-201ENST00000624871 588 ntBASIC15.19■□□□□ 0.02
LMX1BO60663 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1BO60663 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1BO60663 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1BO60663 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC15.19■□□□□ 0.02
LMX1BO60663 AMT-250ENST00000637682 1823 ntTSL 5 BASIC15.19■□□□□ 0.02
LMX1BO60663 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC15.19■□□□□ 0.02
LMX1BO60663 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
LMX1BO60663 CES3-203ENST00000543856 3178 ntTSL 2 BASIC15.19■□□□□ 0.02
LMX1BO60663 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1BO60663 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1BO60663 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC15.19■□□□□ 0.02
LMX1BO60663 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1BO60663 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC15.19■□□□□ 0.02
LMX1BO60663 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
LMX1BO60663 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LMX1BO60663 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
LMX1BO60663 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
LMX1BO60663 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LMX1BO60663 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
LMX1BO60663 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
LMX1BO60663 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
LMX1BO60663 PCDHA14-201ENST00000506751 2298 ntBASIC15.18■□□□□ 0.02
LMX1BO60663 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC15.18■□□□□ 0.02
LMX1BO60663 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
LMX1BO60663 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
LMX1BO60663 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC15.18■□□□□ 0.02
LMX1BO60663 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
LMX1BO60663 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC15.18■□□□□ 0.02
LMX1BO60663 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC15.18■□□□□ 0.02
LMX1BO60663 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
LMX1BO60663 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LMX1BO60663 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LMX1BO60663 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
LMX1BO60663 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
LMX1BO60663 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC15.18■□□□□ 0.02
LMX1BO60663 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LMX1BO60663 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC15.18■□□□□ 0.02
LMX1BO60663 IGHV3-47-201ENST00000425060 335 ntBASIC15.18■□□□□ 0.02
LMX1BO60663 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
LMX1BO60663 SAPCD2P3-201ENST00000455031 850 ntBASIC15.18■□□□□ 0.02
LMX1BO60663 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC15.18■□□□□ 0.02
LMX1BO60663 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC15.18■□□□□ 0.02
LMX1BO60663 FICD-205ENST00000552758 603 ntTSL 2 BASIC15.18■□□□□ 0.02
LMX1BO60663 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LMX1BO60663 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC15.18■□□□□ 0.02
LMX1BO60663 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC15.18■□□□□ 0.02
LMX1BO60663 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC15.18■□□□□ 0.02
LMX1BO60663 AL592071.1-201ENST00000611956 408 ntBASIC15.18■□□□□ 0.02
LMX1BO60663 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
LMX1BO60663 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC15.18■□□□□ 0.02
LMX1BO60663 VPS51-217ENST00000639871 243 ntTSL 5 BASIC15.18■□□□□ 0.02
LMX1BO60663 ANKRD20A8P-203ENST00000641373 517 ntBASIC15.18■□□□□ 0.02
LMX1BO60663 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC15.18■□□□□ 0.02
LMX1BO60663 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC15.18■□□□□ 0.02
LMX1BO60663 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
LMX1BO60663 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
LMX1BO60663 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
LMX1BO60663 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
LMX1BO60663 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LMX1BO60663 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
LMX1BO60663 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LMX1BO60663 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC15.18■□□□□ 0.02
LMX1BO60663 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LMX1BO60663 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC15.18■□□□□ 0.02
LMX1BO60663 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
LMX1BO60663 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
LMX1BO60663 HLA-A-201ENST00000376802 1334 ntBASIC15.17■□□□□ 0.02
LMX1BO60663 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC15.17■□□□□ 0.02
LMX1BO60663 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms