Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SDCBPO00560 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SDCBPO00560 AL353692.3-201ENST00000407031 1396 ntBASIC14.73□□□□□ -0.05
SDCBPO00560 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
SDCBPO00560 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SDCBPO00560 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
SDCBPO00560 BX276092.7-203ENST00000637198 1536 ntBASIC14.72□□□□□ -0.05
SDCBPO00560 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SDCBPO00560 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SDCBPO00560 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SDCBPO00560 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SDCBPO00560 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SDCBPO00560 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SDCBPO00560 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SDCBPO00560 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
SDCBPO00560 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
SDCBPO00560 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
SDCBPO00560 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SDCBPO00560 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
SDCBPO00560 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SDCBPO00560 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SDCBPO00560 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SDCBPO00560 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SDCBPO00560 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC14.72□□□□□ -0.05
SDCBPO00560 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SDCBPO00560 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC14.72□□□□□ -0.05
SDCBPO00560 TMPOP1-202ENST00000424642 1267 ntBASIC14.72□□□□□ -0.05
SDCBPO00560 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC14.72□□□□□ -0.05
SDCBPO00560 AC022616.7-201ENST00000525383 220 ntBASIC14.72□□□□□ -0.05
SDCBPO00560 NAA38-203ENST00000575071 553 ntTSL 2 BASIC14.72□□□□□ -0.05
SDCBPO00560 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC14.72□□□□□ -0.05
SDCBPO00560 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC14.72□□□□□ -0.05
SDCBPO00560 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SDCBPO00560 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
SDCBPO00560 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
SDCBPO00560 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC14.72□□□□□ -0.05
SDCBPO00560 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SDCBPO00560 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SDCBPO00560 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC14.72□□□□□ -0.05
SDCBPO00560 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SDCBPO00560 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
SDCBPO00560 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC14.72□□□□□ -0.05
SDCBPO00560 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SDCBPO00560 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SDCBPO00560 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC14.72□□□□□ -0.05
SDCBPO00560 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SDCBPO00560 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
SDCBPO00560 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SDCBPO00560 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
SDCBPO00560 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
SDCBPO00560 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC14.71□□□□□ -0.05
SDCBPO00560 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC14.71□□□□□ -0.05
SDCBPO00560 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC14.71□□□□□ -0.05
SDCBPO00560 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SDCBPO00560 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SDCBPO00560 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SDCBPO00560 OVCH1-AS1-204ENST00000641955 5529 ntBASIC14.71□□□□□ -0.05
SDCBPO00560 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SDCBPO00560 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
SDCBPO00560 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
SDCBPO00560 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SDCBPO00560 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC14.71□□□□□ -0.05
SDCBPO00560 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC14.71□□□□□ -0.05
SDCBPO00560 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SDCBPO00560 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SDCBPO00560 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
SDCBPO00560 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SDCBPO00560 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
SDCBPO00560 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SDCBPO00560 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SDCBPO00560 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
SDCBPO00560 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC14.71□□□□□ -0.05
SDCBPO00560 RCN1P1-201ENST00000400413 996 ntBASIC14.71□□□□□ -0.05
SDCBPO00560 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC14.71□□□□□ -0.05
SDCBPO00560 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC14.71□□□□□ -0.05
SDCBPO00560 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC14.71□□□□□ -0.05
SDCBPO00560 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SDCBPO00560 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SDCBPO00560 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC14.71□□□□□ -0.05
SDCBPO00560 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
SDCBPO00560 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SDCBPO00560 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
SDCBPO00560 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SDCBPO00560 AL603756.1-201ENST00000606511 2163 ntBASIC14.71□□□□□ -0.05
SDCBPO00560 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
SDCBPO00560 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC14.71□□□□□ -0.06
SDCBPO00560 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.06
SDCBPO00560 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.06
SDCBPO00560 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
SDCBPO00560 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.06
SDCBPO00560 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
SDCBPO00560 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
SDCBPO00560 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
SDCBPO00560 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
SDCBPO00560 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC14.7□□□□□ -0.06
SDCBPO00560 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SDCBPO00560 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SDCBPO00560 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
SDCBPO00560 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SDCBPO00560 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC14.7□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms