Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 SLC25A1P3-201ENST00000395415 828 ntBASIC12.65□□□□□ -0.38
SMKR1H3BMG3 KRT18P29-201ENST00000397031 1267 ntBASIC12.65□□□□□ -0.38
SMKR1H3BMG3 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 AL355355.2-201ENST00000442321 338 ntBASIC12.65□□□□□ -0.38
SMKR1H3BMG3 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 AC024909.3-201ENST00000611513 2257 ntBASIC12.65□□□□□ -0.38
SMKR1H3BMG3 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 AC023824.1-201ENST00000562945 2975 ntBASIC12.65□□□□□ -0.38
SMKR1H3BMG3 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
SMKR1H3BMG3 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.39
SMKR1H3BMG3 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC12.65□□□□□ -0.39
SMKR1H3BMG3 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC12.65□□□□□ -0.39
SMKR1H3BMG3 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC12.65□□□□□ -0.39
SMKR1H3BMG3 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 BX276092.7-203ENST00000637198 1536 ntBASIC12.64□□□□□ -0.39
SMKR1H3BMG3 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 SAPCD2P4-201ENST00000424595 1171 ntBASIC12.64□□□□□ -0.39
SMKR1H3BMG3 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 GRAMD4P1-201ENST00000435181 1110 ntBASIC12.64□□□□□ -0.39
SMKR1H3BMG3 APTR-205ENST00000447009 902 ntTSL 2 BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 ETFA-216ENST00000560726 942 ntTSL 3 BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC12.64□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms