Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 AC092910.1-201ENST00000482027 1129 ntBASIC19.32■□□□□ 0.68
COL4A3BPQ9Y5P4 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC19.32■□□□□ 0.68
COL4A3BPQ9Y5P4 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC19.32■□□□□ 0.68
COL4A3BPQ9Y5P4 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC19.32■□□□□ 0.68
COL4A3BPQ9Y5P4 CYB561-217ENST00000582997 877 ntTSL 5 BASIC19.32■□□□□ 0.68
COL4A3BPQ9Y5P4 CYGB-205ENST00000590175 830 ntTSL 3 BASIC19.32■□□□□ 0.68
COL4A3BPQ9Y5P4 AF228730.7-201ENST00000641842 219 ntBASIC19.32■□□□□ 0.68
COL4A3BPQ9Y5P4 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
COL4A3BPQ9Y5P4 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
COL4A3BPQ9Y5P4 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL4A3BPQ9Y5P4 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL4A3BPQ9Y5P4 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL4A3BPQ9Y5P4 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL4A3BPQ9Y5P4 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL4A3BPQ9Y5P4 AC012313.1-201ENST00000593393 3059 ntBASIC19.32■□□□□ 0.68
COL4A3BPQ9Y5P4 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL4A3BPQ9Y5P4 AC080080.1-201ENST00000625121 2420 ntBASIC19.32■□□□□ 0.68
COL4A3BPQ9Y5P4 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
COL4A3BPQ9Y5P4 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL4A3BPQ9Y5P4 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL4A3BPQ9Y5P4 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
COL4A3BPQ9Y5P4 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A3BPQ9Y5P4 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC19.31■□□□□ 0.68
COL4A3BPQ9Y5P4 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A3BPQ9Y5P4 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A3BPQ9Y5P4 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A3BPQ9Y5P4 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
COL4A3BPQ9Y5P4 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A3BPQ9Y5P4 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
COL4A3BPQ9Y5P4 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC19.31■□□□□ 0.68
COL4A3BPQ9Y5P4 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC19.31■□□□□ 0.68
COL4A3BPQ9Y5P4 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC19.31■□□□□ 0.68
COL4A3BPQ9Y5P4 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A3BPQ9Y5P4 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A3BPQ9Y5P4 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A3BPQ9Y5P4 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A3BPQ9Y5P4 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A3BPQ9Y5P4 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC19.31■□□□□ 0.68
COL4A3BPQ9Y5P4 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC19.31■□□□□ 0.68
COL4A3BPQ9Y5P4 SIGLEC30P-201ENST00000455569 941 ntBASIC19.31■□□□□ 0.68
COL4A3BPQ9Y5P4 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC19.31■□□□□ 0.68
COL4A3BPQ9Y5P4 AC105339.3-201ENST00000560043 636 ntBASIC19.31■□□□□ 0.68
COL4A3BPQ9Y5P4 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
COL4A3BPQ9Y5P4 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC19.31■□□□□ 0.68
COL4A3BPQ9Y5P4 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A3BPQ9Y5P4 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
COL4A3BPQ9Y5P4 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
COL4A3BPQ9Y5P4 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A3BPQ9Y5P4 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
COL4A3BPQ9Y5P4 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC19.31■□□□□ 0.68
COL4A3BPQ9Y5P4 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A3BPQ9Y5P4 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
COL4A3BPQ9Y5P4 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A3BPQ9Y5P4 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A3BPQ9Y5P4 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A3BPQ9Y5P4 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A3BPQ9Y5P4 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A3BPQ9Y5P4 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A3BPQ9Y5P4 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A3BPQ9Y5P4 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A3BPQ9Y5P4 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC19.3■□□□□ 0.68
COL4A3BPQ9Y5P4 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A3BPQ9Y5P4 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A3BPQ9Y5P4 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC19.3■□□□□ 0.68
COL4A3BPQ9Y5P4 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC19.3■□□□□ 0.68
COL4A3BPQ9Y5P4 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A3BPQ9Y5P4 RPL18-209ENST00000550645 463 ntTSL 5 BASIC19.3■□□□□ 0.68
COL4A3BPQ9Y5P4 RPL18-214ENST00000552588 559 ntTSL 3 BASIC19.3■□□□□ 0.68
COL4A3BPQ9Y5P4 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC19.3■□□□□ 0.68
COL4A3BPQ9Y5P4 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A3BPQ9Y5P4 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A3BPQ9Y5P4 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC19.3■□□□□ 0.68
COL4A3BPQ9Y5P4 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A3BPQ9Y5P4 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A3BPQ9Y5P4 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC19.3■□□□□ 0.68
COL4A3BPQ9Y5P4 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A3BPQ9Y5P4 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A3BPQ9Y5P4 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A3BPQ9Y5P4 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A3BPQ9Y5P4 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A3BPQ9Y5P4 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A3BPQ9Y5P4 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A3BPQ9Y5P4 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A3BPQ9Y5P4 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A3BPQ9Y5P4 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
COL4A3BPQ9Y5P4 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC19.29■□□□□ 0.68
COL4A3BPQ9Y5P4 AP002414.3-201ENST00000589352 1468 ntBASIC19.29■□□□□ 0.68
COL4A3BPQ9Y5P4 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A3BPQ9Y5P4 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
COL4A3BPQ9Y5P4 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A3BPQ9Y5P4 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A3BPQ9Y5P4 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A3BPQ9Y5P4 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A3BPQ9Y5P4 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC19.29■□□□□ 0.68
COL4A3BPQ9Y5P4 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC19.29■□□□□ 0.68
COL4A3BPQ9Y5P4 CENPM-204ENST00000402420 688 ntTSL 5 BASIC19.29■□□□□ 0.68
COL4A3BPQ9Y5P4 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC19.29■□□□□ 0.68
COL4A3BPQ9Y5P4 AC098831.1-202ENST00000438821 336 ntBASIC19.29■□□□□ 0.68
COL4A3BPQ9Y5P4 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC19.29■□□□□ 0.68
COL4A3BPQ9Y5P4 RPL13AP23-201ENST00000480739 586 ntBASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms