Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC16.72■□□□□ 0.27
CUEDC1Q9NWM3 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CUEDC1Q9NWM3 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CUEDC1Q9NWM3 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
CUEDC1Q9NWM3 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
CUEDC1Q9NWM3 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
CUEDC1Q9NWM3 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC16.72■□□□□ 0.27
CUEDC1Q9NWM3 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC16.72■□□□□ 0.27
CUEDC1Q9NWM3 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC16.72■□□□□ 0.27
CUEDC1Q9NWM3 IRF8-202ENST00000562492 946 ntTSL 3 BASIC16.72■□□□□ 0.27
CUEDC1Q9NWM3 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC16.72■□□□□ 0.27
CUEDC1Q9NWM3 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
CUEDC1Q9NWM3 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC16.72■□□□□ 0.27
CUEDC1Q9NWM3 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
CUEDC1Q9NWM3 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
CUEDC1Q9NWM3 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
CUEDC1Q9NWM3 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
CUEDC1Q9NWM3 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CUEDC1Q9NWM3 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC16.72■□□□□ 0.27
CUEDC1Q9NWM3 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC16.72■□□□□ 0.27
CUEDC1Q9NWM3 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CUEDC1Q9NWM3 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CUEDC1Q9NWM3 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CUEDC1Q9NWM3 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
CUEDC1Q9NWM3 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CUEDC1Q9NWM3 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CUEDC1Q9NWM3 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CUEDC1Q9NWM3 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
CUEDC1Q9NWM3 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CUEDC1Q9NWM3 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
CUEDC1Q9NWM3 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CUEDC1Q9NWM3 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CUEDC1Q9NWM3 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CUEDC1Q9NWM3 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CUEDC1Q9NWM3 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CUEDC1Q9NWM3 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CUEDC1Q9NWM3 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CUEDC1Q9NWM3 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CUEDC1Q9NWM3 AL023806.1-201ENST00000603994 1649 ntBASIC16.71■□□□□ 0.27
CUEDC1Q9NWM3 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
CUEDC1Q9NWM3 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CUEDC1Q9NWM3 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CUEDC1Q9NWM3 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CUEDC1Q9NWM3 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
CUEDC1Q9NWM3 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CUEDC1Q9NWM3 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC16.71■□□□□ 0.27
CUEDC1Q9NWM3 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC16.71■□□□□ 0.27
CUEDC1Q9NWM3 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
CUEDC1Q9NWM3 AC021087.4-201ENST00000563761 564 ntBASIC16.71■□□□□ 0.27
CUEDC1Q9NWM3 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC16.71■□□□□ 0.27
CUEDC1Q9NWM3 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.71■□□□□ 0.27
CUEDC1Q9NWM3 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC16.71■□□□□ 0.27
CUEDC1Q9NWM3 AL022326.1-202ENST00000641533 845 ntBASIC16.71■□□□□ 0.27
CUEDC1Q9NWM3 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
CUEDC1Q9NWM3 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC16.71■□□□□ 0.27
CUEDC1Q9NWM3 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CUEDC1Q9NWM3 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
CUEDC1Q9NWM3 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CUEDC1Q9NWM3 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CUEDC1Q9NWM3 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CUEDC1Q9NWM3 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC16.71■□□□□ 0.26
CUEDC1Q9NWM3 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
CUEDC1Q9NWM3 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
CUEDC1Q9NWM3 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.26
CUEDC1Q9NWM3 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CUEDC1Q9NWM3 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.7■□□□□ 0.26
CUEDC1Q9NWM3 AC016396.2-201ENST00000562575 1417 ntBASIC16.7■□□□□ 0.26
CUEDC1Q9NWM3 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CUEDC1Q9NWM3 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
CUEDC1Q9NWM3 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC16.7■□□□□ 0.26
CUEDC1Q9NWM3 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CUEDC1Q9NWM3 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
CUEDC1Q9NWM3 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
CUEDC1Q9NWM3 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC16.7■□□□□ 0.26
CUEDC1Q9NWM3 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC16.7■□□□□ 0.26
CUEDC1Q9NWM3 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC16.7■□□□□ 0.26
CUEDC1Q9NWM3 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CUEDC1Q9NWM3 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
CUEDC1Q9NWM3 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CUEDC1Q9NWM3 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
CUEDC1Q9NWM3 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.7■□□□□ 0.26
CUEDC1Q9NWM3 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CUEDC1Q9NWM3 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
CUEDC1Q9NWM3 SLC25A1P3-201ENST00000395415 828 ntBASIC16.7■□□□□ 0.26
CUEDC1Q9NWM3 HIST2H3DP1-201ENST00000401004 416 ntBASIC16.7■□□□□ 0.26
CUEDC1Q9NWM3 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC16.7■□□□□ 0.26
CUEDC1Q9NWM3 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC16.7■□□□□ 0.26
CUEDC1Q9NWM3 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC16.7■□□□□ 0.26
CUEDC1Q9NWM3 SCARNA2-201ENST00000458748 420 ntBASIC16.7■□□□□ 0.26
CUEDC1Q9NWM3 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC16.7■□□□□ 0.26
CUEDC1Q9NWM3 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC16.7■□□□□ 0.26
CUEDC1Q9NWM3 S100A2-206ENST00000497140 697 ntTSL 2 BASIC16.7■□□□□ 0.26
CUEDC1Q9NWM3 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC16.7■□□□□ 0.26
CUEDC1Q9NWM3 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC16.7■□□□□ 0.26
CUEDC1Q9NWM3 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CUEDC1Q9NWM3 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC16.7■□□□□ 0.26
CUEDC1Q9NWM3 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC16.7■□□□□ 0.26
CUEDC1Q9NWM3 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC16.7■□□□□ 0.26
CUEDC1Q9NWM3 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
CUEDC1Q9NWM3 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms