Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TM9SF3Q9HD45 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
TM9SF3Q9HD45 GNE-204ENST00000539208 2190 ntTSL 2 BASIC17.28■□□□□ 0.36
TM9SF3Q9HD45 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TM9SF3Q9HD45 AC097637.2-201ENST00000624096 1997 ntBASIC17.28■□□□□ 0.36
TM9SF3Q9HD45 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC17.28■□□□□ 0.36
TM9SF3Q9HD45 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC17.28■□□□□ 0.36
TM9SF3Q9HD45 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TM9SF3Q9HD45 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TM9SF3Q9HD45 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.27■□□□□ 0.36
TM9SF3Q9HD45 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC17.27■□□□□ 0.36
TM9SF3Q9HD45 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.27■□□□□ 0.36
TM9SF3Q9HD45 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TM9SF3Q9HD45 GPR89P-201ENST00000407924 1495 ntBASIC17.27■□□□□ 0.36
TM9SF3Q9HD45 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
TM9SF3Q9HD45 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TM9SF3Q9HD45 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TM9SF3Q9HD45 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TM9SF3Q9HD45 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TM9SF3Q9HD45 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TM9SF3Q9HD45 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
TM9SF3Q9HD45 MRPL20P1-201ENST00000400819 433 ntBASIC17.27■□□□□ 0.36
TM9SF3Q9HD45 IGLL3P-201ENST00000412472 434 ntBASIC17.27■□□□□ 0.36
TM9SF3Q9HD45 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC17.27■□□□□ 0.36
TM9SF3Q9HD45 HTR5BP-201ENST00000430851 1154 ntBASIC17.27■□□□□ 0.36
TM9SF3Q9HD45 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.27■□□□□ 0.36
TM9SF3Q9HD45 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC17.27■□□□□ 0.36
TM9SF3Q9HD45 CD63-210ENST00000550776 870 ntTSL 5 BASIC17.27■□□□□ 0.36
TM9SF3Q9HD45 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC17.27■□□□□ 0.36
TM9SF3Q9HD45 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC17.27■□□□□ 0.36
TM9SF3Q9HD45 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC17.27■□□□□ 0.36
TM9SF3Q9HD45 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TM9SF3Q9HD45 AL078644.1-201ENST00000609881 752 ntBASIC17.27■□□□□ 0.36
TM9SF3Q9HD45 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC17.27■□□□□ 0.36
TM9SF3Q9HD45 AC010654.1-201ENST00000615722 808 ntBASIC17.27■□□□□ 0.36
TM9SF3Q9HD45 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
TM9SF3Q9HD45 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TM9SF3Q9HD45 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
TM9SF3Q9HD45 FST-202ENST00000396947 2538 ntTSL 5 BASIC17.27■□□□□ 0.36
TM9SF3Q9HD45 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC17.27■□□□□ 0.36
TM9SF3Q9HD45 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
TM9SF3Q9HD45 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
TM9SF3Q9HD45 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.35
TM9SF3Q9HD45 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TM9SF3Q9HD45 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
TM9SF3Q9HD45 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.35
TM9SF3Q9HD45 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TM9SF3Q9HD45 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TM9SF3Q9HD45 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.26■□□□□ 0.35
TM9SF3Q9HD45 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TM9SF3Q9HD45 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
TM9SF3Q9HD45 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.26■□□□□ 0.35
TM9SF3Q9HD45 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.26■□□□□ 0.35
TM9SF3Q9HD45 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
TM9SF3Q9HD45 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TM9SF3Q9HD45 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC17.26■□□□□ 0.35
TM9SF3Q9HD45 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
TM9SF3Q9HD45 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TM9SF3Q9HD45 PTCHD3P3-201ENST00000403073 906 ntBASIC17.26■□□□□ 0.35
TM9SF3Q9HD45 ATP6V0CP3-201ENST00000417255 467 ntBASIC17.26■□□□□ 0.35
TM9SF3Q9HD45 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC17.26■□□□□ 0.35
TM9SF3Q9HD45 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC17.26■□□□□ 0.35
TM9SF3Q9HD45 METTL21AP1-201ENST00000438852 635 ntBASIC17.26■□□□□ 0.35
TM9SF3Q9HD45 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC17.26■□□□□ 0.35
TM9SF3Q9HD45 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC17.26■□□□□ 0.35
TM9SF3Q9HD45 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC17.26■□□□□ 0.35
TM9SF3Q9HD45 CIPC-205ENST00000555437 566 ntTSL 3 BASIC17.26■□□□□ 0.35
TM9SF3Q9HD45 RIN3-211ENST00000557762 517 ntTSL 3 BASIC17.26■□□□□ 0.35
TM9SF3Q9HD45 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17.26■□□□□ 0.35
TM9SF3Q9HD45 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
TM9SF3Q9HD45 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TM9SF3Q9HD45 AC009336.1-201ENST00000608941 1553 ntBASIC17.26■□□□□ 0.35
TM9SF3Q9HD45 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TM9SF3Q9HD45 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
TM9SF3Q9HD45 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TM9SF3Q9HD45 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.26■□□□□ 0.35
TM9SF3Q9HD45 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
TM9SF3Q9HD45 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC17.26■□□□□ 0.35
TM9SF3Q9HD45 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TM9SF3Q9HD45 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TM9SF3Q9HD45 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TM9SF3Q9HD45 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TM9SF3Q9HD45 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC17.25■□□□□ 0.35
TM9SF3Q9HD45 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TM9SF3Q9HD45 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
TM9SF3Q9HD45 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.25■□□□□ 0.35
TM9SF3Q9HD45 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TM9SF3Q9HD45 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
TM9SF3Q9HD45 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
TM9SF3Q9HD45 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TM9SF3Q9HD45 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TM9SF3Q9HD45 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
TM9SF3Q9HD45 AC254562.1-201ENST00000417586 456 ntBASIC17.25■□□□□ 0.35
TM9SF3Q9HD45 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
TM9SF3Q9HD45 AL353135.1-201ENST00000606729 504 ntBASIC17.25■□□□□ 0.35
TM9SF3Q9HD45 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC17.25■□□□□ 0.35
TM9SF3Q9HD45 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TM9SF3Q9HD45 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TM9SF3Q9HD45 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC17.25■□□□□ 0.35
TM9SF3Q9HD45 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms