Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC21.96■■□□□ 1.11
CHMP4AQ9BY43 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC21.96■■□□□ 1.11
CHMP4AQ9BY43 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC21.96■■□□□ 1.11
CHMP4AQ9BY43 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
CHMP4AQ9BY43 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
CHMP4AQ9BY43 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CHMP4AQ9BY43 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC21.95■■□□□ 1.1
CHMP4AQ9BY43 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CHMP4AQ9BY43 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC21.95■■□□□ 1.1
CHMP4AQ9BY43 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CHMP4AQ9BY43 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC21.95■■□□□ 1.1
CHMP4AQ9BY43 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
CHMP4AQ9BY43 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CHMP4AQ9BY43 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
CHMP4AQ9BY43 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CHMP4AQ9BY43 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC21.95■■□□□ 1.1
CHMP4AQ9BY43 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CHMP4AQ9BY43 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC21.95■■□□□ 1.1
CHMP4AQ9BY43 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC21.95■■□□□ 1.1
CHMP4AQ9BY43 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC21.95■■□□□ 1.1
CHMP4AQ9BY43 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CHMP4AQ9BY43 POLD2P1-201ENST00000511220 997 ntBASIC21.95■■□□□ 1.1
CHMP4AQ9BY43 PGAM5P1-201ENST00000518923 814 ntBASIC21.95■■□□□ 1.1
CHMP4AQ9BY43 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC21.95■■□□□ 1.1
CHMP4AQ9BY43 AC007064.4-201ENST00000637740 555 ntBASIC21.95■■□□□ 1.1
CHMP4AQ9BY43 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CHMP4AQ9BY43 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC21.95■■□□□ 1.1
CHMP4AQ9BY43 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC21.95■■□□□ 1.1
CHMP4AQ9BY43 AC002310.6-201ENST00000624451 1377 ntBASIC21.95■■□□□ 1.1
CHMP4AQ9BY43 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
CHMP4AQ9BY43 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CHMP4AQ9BY43 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CHMP4AQ9BY43 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CHMP4AQ9BY43 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC21.94■■□□□ 1.1
CHMP4AQ9BY43 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC21.94■■□□□ 1.1
CHMP4AQ9BY43 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CHMP4AQ9BY43 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
CHMP4AQ9BY43 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC21.94■■□□□ 1.1
CHMP4AQ9BY43 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CHMP4AQ9BY43 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CHMP4AQ9BY43 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CHMP4AQ9BY43 MIR940-201ENST00000401276 94 ntBASIC21.94■■□□□ 1.1
CHMP4AQ9BY43 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC21.94■■□□□ 1.1
CHMP4AQ9BY43 AC087163.2-201ENST00000457299 853 ntBASIC21.94■■□□□ 1.1
CHMP4AQ9BY43 NMU-202ENST00000505262 693 ntTSL 3 BASIC21.94■■□□□ 1.1
CHMP4AQ9BY43 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC21.94■■□□□ 1.1
CHMP4AQ9BY43 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC21.94■■□□□ 1.1
CHMP4AQ9BY43 AC002347.1-201ENST00000569543 541 ntBASIC21.94■■□□□ 1.1
CHMP4AQ9BY43 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC21.94■■□□□ 1.1
CHMP4AQ9BY43 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC21.94■■□□□ 1.1
CHMP4AQ9BY43 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
CHMP4AQ9BY43 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC21.94■■□□□ 1.1
CHMP4AQ9BY43 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CHMP4AQ9BY43 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC21.94■■□□□ 1.1
CHMP4AQ9BY43 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CHMP4AQ9BY43 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CHMP4AQ9BY43 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
CHMP4AQ9BY43 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
CHMP4AQ9BY43 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CHMP4AQ9BY43 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
CHMP4AQ9BY43 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CHMP4AQ9BY43 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
CHMP4AQ9BY43 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CHMP4AQ9BY43 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CHMP4AQ9BY43 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC21.93■■□□□ 1.1
CHMP4AQ9BY43 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
CHMP4AQ9BY43 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
CHMP4AQ9BY43 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CHMP4AQ9BY43 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
CHMP4AQ9BY43 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CHMP4AQ9BY43 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
CHMP4AQ9BY43 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CHMP4AQ9BY43 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC21.93■■□□□ 1.1
CHMP4AQ9BY43 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
CHMP4AQ9BY43 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC21.93■■□□□ 1.1
CHMP4AQ9BY43 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC21.93■■□□□ 1.1
CHMP4AQ9BY43 RHOQP3-201ENST00000437982 621 ntBASIC21.93■■□□□ 1.1
CHMP4AQ9BY43 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC21.93■■□□□ 1.1
CHMP4AQ9BY43 FAM185BP-201ENST00000443595 716 ntBASIC21.93■■□□□ 1.1
CHMP4AQ9BY43 DNAJB3-201ENST00000446806 729 ntBASIC21.93■■□□□ 1.1
CHMP4AQ9BY43 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
CHMP4AQ9BY43 CXCL1P1-201ENST00000502804 216 ntBASIC21.93■■□□□ 1.1
CHMP4AQ9BY43 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC21.93■■□□□ 1.1
CHMP4AQ9BY43 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC21.93■■□□□ 1.1
CHMP4AQ9BY43 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
CHMP4AQ9BY43 OR7E47P-204ENST00000575924 449 ntBASIC21.93■■□□□ 1.1
CHMP4AQ9BY43 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC21.93■■□□□ 1.1
CHMP4AQ9BY43 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC21.93■■□□□ 1.1
CHMP4AQ9BY43 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC21.93■■□□□ 1.1
CHMP4AQ9BY43 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC21.93■■□□□ 1.1
CHMP4AQ9BY43 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
CHMP4AQ9BY43 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CHMP4AQ9BY43 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
CHMP4AQ9BY43 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CHMP4AQ9BY43 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CHMP4AQ9BY43 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CHMP4AQ9BY43 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
CHMP4AQ9BY43 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC21.92■■□□□ 1.1
CHMP4AQ9BY43 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
CHMP4AQ9BY43 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 7.9 ms