Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC19.75■□□□□ 0.75
USP28Q96RU2 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP28Q96RU2 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP28Q96RU2 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP28Q96RU2 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP28Q96RU2 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP28Q96RU2 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC19.74■□□□□ 0.75
USP28Q96RU2 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC19.74■□□□□ 0.75
USP28Q96RU2 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP28Q96RU2 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
USP28Q96RU2 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP28Q96RU2 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC19.74■□□□□ 0.75
USP28Q96RU2 MINOS1P3-201ENST00000457048 203 ntBASIC19.74■□□□□ 0.75
USP28Q96RU2 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC19.74■□□□□ 0.75
USP28Q96RU2 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC19.74■□□□□ 0.75
USP28Q96RU2 BET1L-206ENST00000486280 665 ntTSL 3 BASIC19.74■□□□□ 0.75
USP28Q96RU2 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC19.74■□□□□ 0.75
USP28Q96RU2 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
USP28Q96RU2 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC19.74■□□□□ 0.75
USP28Q96RU2 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
USP28Q96RU2 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
USP28Q96RU2 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP28Q96RU2 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP28Q96RU2 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP28Q96RU2 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
USP28Q96RU2 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
USP28Q96RU2 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC19.74■□□□□ 0.75
USP28Q96RU2 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
USP28Q96RU2 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
USP28Q96RU2 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP28Q96RU2 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC19.73■□□□□ 0.75
USP28Q96RU2 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP28Q96RU2 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP28Q96RU2 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP28Q96RU2 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
USP28Q96RU2 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP28Q96RU2 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP28Q96RU2 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
USP28Q96RU2 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
USP28Q96RU2 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP28Q96RU2 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
USP28Q96RU2 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC19.73■□□□□ 0.75
USP28Q96RU2 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC19.73■□□□□ 0.75
USP28Q96RU2 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC19.73■□□□□ 0.75
USP28Q96RU2 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC19.73■□□□□ 0.75
USP28Q96RU2 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC19.73■□□□□ 0.75
USP28Q96RU2 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP28Q96RU2 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC19.73■□□□□ 0.75
USP28Q96RU2 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC19.73■□□□□ 0.75
USP28Q96RU2 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
USP28Q96RU2 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC19.73■□□□□ 0.75
USP28Q96RU2 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP28Q96RU2 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC19.73■□□□□ 0.75
USP28Q96RU2 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP28Q96RU2 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP28Q96RU2 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
USP28Q96RU2 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP28Q96RU2 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC19.73■□□□□ 0.75
USP28Q96RU2 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC19.73■□□□□ 0.75
USP28Q96RU2 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP28Q96RU2 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP28Q96RU2 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
USP28Q96RU2 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP28Q96RU2 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC19.73■□□□□ 0.75
USP28Q96RU2 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP28Q96RU2 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP28Q96RU2 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP28Q96RU2 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
USP28Q96RU2 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP28Q96RU2 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP28Q96RU2 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
USP28Q96RU2 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
USP28Q96RU2 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
USP28Q96RU2 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
USP28Q96RU2 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
USP28Q96RU2 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
USP28Q96RU2 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC19.72■□□□□ 0.75
USP28Q96RU2 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP28Q96RU2 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC19.72■□□□□ 0.75
USP28Q96RU2 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
USP28Q96RU2 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC19.72■□□□□ 0.75
USP28Q96RU2 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC19.72■□□□□ 0.75
USP28Q96RU2 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC19.72■□□□□ 0.75
USP28Q96RU2 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
USP28Q96RU2 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
USP28Q96RU2 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
USP28Q96RU2 GPR89P-201ENST00000407924 1495 ntBASIC19.72■□□□□ 0.75
USP28Q96RU2 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC19.72■□□□□ 0.75
USP28Q96RU2 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC19.72■□□□□ 0.75
USP28Q96RU2 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
USP28Q96RU2 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP28Q96RU2 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP28Q96RU2 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP28Q96RU2 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
USP28Q96RU2 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP28Q96RU2 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC19.71■□□□□ 0.75
USP28Q96RU2 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC19.71■□□□□ 0.75
USP28Q96RU2 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP28Q96RU2 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP28Q96RU2 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms