Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00477Q96M19 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00477Q96M19 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00477Q96M19 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
LINC00477Q96M19 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00477Q96M19 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC12.97□□□□□ -0.33
LINC00477Q96M19 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00477Q96M19 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC12.97□□□□□ -0.33
LINC00477Q96M19 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
LINC00477Q96M19 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC12.96□□□□□ -0.33
LINC00477Q96M19 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC12.96□□□□□ -0.33
LINC00477Q96M19 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC12.96□□□□□ -0.33
LINC00477Q96M19 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
LINC00477Q96M19 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
LINC00477Q96M19 FLJ16779-201ENST00000612722 7638 ntBASIC12.96□□□□□ -0.33
LINC00477Q96M19 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
LINC00477Q96M19 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
LINC00477Q96M19 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC12.96□□□□□ -0.33
LINC00477Q96M19 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
LINC00477Q96M19 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
LINC00477Q96M19 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
LINC00477Q96M19 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
LINC00477Q96M19 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.33
LINC00477Q96M19 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC12.96□□□□□ -0.33
LINC00477Q96M19 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
LINC00477Q96M19 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC12.96□□□□□ -0.33
LINC00477Q96M19 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC12.96□□□□□ -0.33
LINC00477Q96M19 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
LINC00477Q96M19 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
LINC00477Q96M19 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
LINC00477Q96M19 CD9-202ENST00000382515 1229 ntTSL 5 BASIC12.96□□□□□ -0.33
LINC00477Q96M19 AL645929.1-201ENST00000420084 975 ntBASIC12.96□□□□□ -0.33
LINC00477Q96M19 KRT18P57-201ENST00000443599 1254 ntBASIC12.96□□□□□ -0.33
LINC00477Q96M19 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
LINC00477Q96M19 DANCR-204ENST00000444958 709 ntTSL 3 BASIC12.96□□□□□ -0.33
LINC00477Q96M19 RN7SL606P-201ENST00000472779 293 ntBASIC12.96□□□□□ -0.33
LINC00477Q96M19 AC063952.2-201ENST00000498792 1227 ntBASIC12.96□□□□□ -0.33
LINC00477Q96M19 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC12.96□□□□□ -0.33
LINC00477Q96M19 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC12.96□□□□□ -0.33
LINC00477Q96M19 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
LINC00477Q96M19 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC12.96□□□□□ -0.33
LINC00477Q96M19 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC12.96□□□□□ -0.33
LINC00477Q96M19 LINC01023-201ENST00000606054 436 ntBASIC12.96□□□□□ -0.33
LINC00477Q96M19 AL353801.3-201ENST00000609898 542 ntBASIC12.96□□□□□ -0.33
LINC00477Q96M19 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC12.96□□□□□ -0.33
LINC00477Q96M19 VPS72-207ENST00000640458 689 ntTSL 5 BASIC12.96□□□□□ -0.33
LINC00477Q96M19 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
LINC00477Q96M19 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
LINC00477Q96M19 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
LINC00477Q96M19 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
LINC00477Q96M19 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
LINC00477Q96M19 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
LINC00477Q96M19 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
LINC00477Q96M19 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
LINC00477Q96M19 AC105020.1-201ENST00000435356 2205 ntBASIC12.96□□□□□ -0.34
LINC00477Q96M19 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
LINC00477Q96M19 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
LINC00477Q96M19 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC12.96□□□□□ -0.34
LINC00477Q96M19 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00477Q96M19 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00477Q96M19 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00477Q96M19 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC12.95□□□□□ -0.34
LINC00477Q96M19 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00477Q96M19 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00477Q96M19 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC12.95□□□□□ -0.34
LINC00477Q96M19 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC12.95□□□□□ -0.34
LINC00477Q96M19 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00477Q96M19 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00477Q96M19 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC12.95□□□□□ -0.34
LINC00477Q96M19 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00477Q96M19 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
LINC00477Q96M19 AL049757.1-201ENST00000616842 1596 ntBASIC12.95□□□□□ -0.34
LINC00477Q96M19 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00477Q96M19 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00477Q96M19 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00477Q96M19 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC12.95□□□□□ -0.34
LINC00477Q96M19 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
LINC00477Q96M19 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00477Q96M19 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00477Q96M19 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00477Q96M19 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00477Q96M19 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC12.95□□□□□ -0.34
LINC00477Q96M19 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC12.95□□□□□ -0.34
LINC00477Q96M19 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00477Q96M19 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00477Q96M19 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC12.95□□□□□ -0.34
LINC00477Q96M19 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC12.95□□□□□ -0.34
LINC00477Q96M19 AL671277.2-201ENST00000458060 996 ntBASIC12.95□□□□□ -0.34
LINC00477Q96M19 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC12.95□□□□□ -0.34
LINC00477Q96M19 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC12.95□□□□□ -0.34
LINC00477Q96M19 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC12.95□□□□□ -0.34
LINC00477Q96M19 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00477Q96M19 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC12.95□□□□□ -0.34
LINC00477Q96M19 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00477Q96M19 AC009533.2-201ENST00000543664 586 ntBASIC12.95□□□□□ -0.34
LINC00477Q96M19 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00477Q96M19 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00477Q96M19 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC12.95□□□□□ -0.34
LINC00477Q96M19 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC12.95□□□□□ -0.34
LINC00477Q96M19 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC12.95□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms