Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LRCH3Q96II8 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.59■□□□□ 0.57
LRCH3Q96II8 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.59■□□□□ 0.57
LRCH3Q96II8 AKAP8P1-201ENST00000434743 1349 ntBASIC18.59■□□□□ 0.57
LRCH3Q96II8 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
LRCH3Q96II8 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
LRCH3Q96II8 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
LRCH3Q96II8 AC141586.3-201ENST00000562166 1838 ntBASIC18.59■□□□□ 0.57
LRCH3Q96II8 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
LRCH3Q96II8 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
LRCH3Q96II8 AC092933.1-201ENST00000393644 945 ntBASIC18.59■□□□□ 0.57
LRCH3Q96II8 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC18.59■□□□□ 0.57
LRCH3Q96II8 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LRCH3Q96II8 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC18.59■□□□□ 0.57
LRCH3Q96II8 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC18.59■□□□□ 0.57
LRCH3Q96II8 API5-211ENST00000534695 560 ntTSL 5 BASIC18.59■□□□□ 0.57
LRCH3Q96II8 AC140912.1-201ENST00000577171 1054 ntBASIC18.59■□□□□ 0.57
LRCH3Q96II8 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
LRCH3Q96II8 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
LRCH3Q96II8 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
LRCH3Q96II8 MIR6787-201ENST00000616675 61 ntBASIC18.59■□□□□ 0.57
LRCH3Q96II8 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC18.59■□□□□ 0.57
LRCH3Q96II8 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
LRCH3Q96II8 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC18.59■□□□□ 0.57
LRCH3Q96II8 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC18.59■□□□□ 0.57
LRCH3Q96II8 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LRCH3Q96II8 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
LRCH3Q96II8 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
LRCH3Q96II8 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LRCH3Q96II8 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC18.59■□□□□ 0.57
LRCH3Q96II8 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.59■□□□□ 0.57
LRCH3Q96II8 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
LRCH3Q96II8 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LRCH3Q96II8 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.59■□□□□ 0.57
LRCH3Q96II8 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
LRCH3Q96II8 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LRCH3Q96II8 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC18.58■□□□□ 0.57
LRCH3Q96II8 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LRCH3Q96II8 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
LRCH3Q96II8 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
LRCH3Q96II8 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LRCH3Q96II8 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LRCH3Q96II8 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.58■□□□□ 0.57
LRCH3Q96II8 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LRCH3Q96II8 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
LRCH3Q96II8 AC132938.6-201ENST00000623828 1655 ntBASIC18.58■□□□□ 0.57
LRCH3Q96II8 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.58■□□□□ 0.56
LRCH3Q96II8 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LRCH3Q96II8 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.58■□□□□ 0.56
LRCH3Q96II8 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LRCH3Q96II8 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
LRCH3Q96II8 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
LRCH3Q96II8 DGCR5-201ENST00000399539 862 ntBASIC18.58■□□□□ 0.56
LRCH3Q96II8 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC18.58■□□□□ 0.56
LRCH3Q96II8 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC18.58■□□□□ 0.56
LRCH3Q96II8 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC18.58■□□□□ 0.56
LRCH3Q96II8 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LRCH3Q96II8 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC18.58■□□□□ 0.56
LRCH3Q96II8 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
LRCH3Q96II8 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.58■□□□□ 0.56
LRCH3Q96II8 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC18.58■□□□□ 0.56
LRCH3Q96II8 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
LRCH3Q96II8 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
LRCH3Q96II8 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LRCH3Q96II8 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LRCH3Q96II8 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
LRCH3Q96II8 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LRCH3Q96II8 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.57■□□□□ 0.56
LRCH3Q96II8 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
LRCH3Q96II8 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
LRCH3Q96II8 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LRCH3Q96II8 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
LRCH3Q96II8 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LRCH3Q96II8 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.57■□□□□ 0.56
LRCH3Q96II8 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
LRCH3Q96II8 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LRCH3Q96II8 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC18.57■□□□□ 0.56
LRCH3Q96II8 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
LRCH3Q96II8 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LRCH3Q96II8 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LRCH3Q96II8 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
LRCH3Q96II8 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC18.57■□□□□ 0.56
LRCH3Q96II8 RN7SL752P-201ENST00000463779 287 ntBASIC18.57■□□□□ 0.56
LRCH3Q96II8 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC18.57■□□□□ 0.56
LRCH3Q96II8 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LRCH3Q96II8 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC18.57■□□□□ 0.56
LRCH3Q96II8 MIR4453-201ENST00000584019 89 ntBASIC18.57■□□□□ 0.56
LRCH3Q96II8 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC18.57■□□□□ 0.56
LRCH3Q96II8 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC18.57■□□□□ 0.56
LRCH3Q96II8 SSH2-211ENST00000590153 570 ntTSL 4 BASIC18.57■□□□□ 0.56
LRCH3Q96II8 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC18.57■□□□□ 0.56
LRCH3Q96II8 AC019129.2-201ENST00000609837 1235 ntBASIC18.57■□□□□ 0.56
LRCH3Q96II8 AC073592.8-201ENST00000624126 511 ntBASIC18.57■□□□□ 0.56
LRCH3Q96II8 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.57■□□□□ 0.56
LRCH3Q96II8 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC18.57■□□□□ 0.56
LRCH3Q96II8 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
LRCH3Q96II8 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LRCH3Q96II8 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
LRCH3Q96II8 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LRCH3Q96II8 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms