Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC20.32■□□□□ 0.84
BRF1Q92994 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
BRF1Q92994 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
BRF1Q92994 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
BRF1Q92994 AC097637.2-201ENST00000624096 1997 ntBASIC20.32■□□□□ 0.84
BRF1Q92994 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
BRF1Q92994 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC20.32■□□□□ 0.84
BRF1Q92994 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
BRF1Q92994 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
BRF1Q92994 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
BRF1Q92994 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
BRF1Q92994 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
BRF1Q92994 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
BRF1Q92994 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC20.32■□□□□ 0.84
BRF1Q92994 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC20.32■□□□□ 0.84
BRF1Q92994 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC20.32■□□□□ 0.84
BRF1Q92994 TBCB-205ENST00000585746 875 ntTSL 3 BASIC20.32■□□□□ 0.84
BRF1Q92994 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC20.32■□□□□ 0.84
BRF1Q92994 HR-201ENST00000312841 5351 ntTSL 5 BASIC20.32■□□□□ 0.84
BRF1Q92994 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
BRF1Q92994 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
BRF1Q92994 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
BRF1Q92994 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC20.32■□□□□ 0.84
BRF1Q92994 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC20.31■□□□□ 0.84
BRF1Q92994 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
BRF1Q92994 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
BRF1Q92994 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
BRF1Q92994 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
BRF1Q92994 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
BRF1Q92994 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
BRF1Q92994 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
BRF1Q92994 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
BRF1Q92994 AC092068.3-201ENST00000587894 2016 ntBASIC20.31■□□□□ 0.84
BRF1Q92994 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
BRF1Q92994 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
BRF1Q92994 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
BRF1Q92994 DFFB-203ENST00000341385 572 ntTSL 5 BASIC20.31■□□□□ 0.84
BRF1Q92994 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
BRF1Q92994 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
BRF1Q92994 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
BRF1Q92994 KRT18P56-201ENST00000507275 550 ntBASIC20.31■□□□□ 0.84
BRF1Q92994 TPM1-218ENST00000559281 851 ntTSL 5 BASIC20.31■□□□□ 0.84
BRF1Q92994 COX5A-202ENST00000562233 441 ntTSL 3 BASIC20.31■□□□□ 0.84
BRF1Q92994 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
BRF1Q92994 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
BRF1Q92994 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
BRF1Q92994 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
BRF1Q92994 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
BRF1Q92994 AC084018.2-201ENST00000613093 2607 ntBASIC20.31■□□□□ 0.84
BRF1Q92994 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
BRF1Q92994 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
BRF1Q92994 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
BRF1Q92994 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
BRF1Q92994 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
BRF1Q92994 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
BRF1Q92994 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
BRF1Q92994 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
BRF1Q92994 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
BRF1Q92994 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
BRF1Q92994 AKR1C7P-201ENST00000305623 895 ntBASIC20.3■□□□□ 0.84
BRF1Q92994 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
BRF1Q92994 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
BRF1Q92994 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
BRF1Q92994 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC20.3■□□□□ 0.84
BRF1Q92994 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC20.3■□□□□ 0.84
BRF1Q92994 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
BRF1Q92994 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
BRF1Q92994 MTDHP3-201ENST00000594186 672 ntBASIC20.3■□□□□ 0.84
BRF1Q92994 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC20.3■□□□□ 0.84
BRF1Q92994 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
BRF1Q92994 AC106886.4-201ENST00000623557 2502 ntBASIC20.3■□□□□ 0.84
BRF1Q92994 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC20.3■□□□□ 0.84
BRF1Q92994 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
BRF1Q92994 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
BRF1Q92994 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC20.3■□□□□ 0.84
BRF1Q92994 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
BRF1Q92994 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
BRF1Q92994 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC20.3■□□□□ 0.84
BRF1Q92994 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
BRF1Q92994 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
BRF1Q92994 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC20.3■□□□□ 0.84
BRF1Q92994 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC20.3■□□□□ 0.84
BRF1Q92994 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
BRF1Q92994 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
BRF1Q92994 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
BRF1Q92994 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
BRF1Q92994 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
BRF1Q92994 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
BRF1Q92994 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
BRF1Q92994 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
BRF1Q92994 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
BRF1Q92994 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
BRF1Q92994 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
BRF1Q92994 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
BRF1Q92994 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
BRF1Q92994 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
BRF1Q92994 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
BRF1Q92994 RBM17P3-201ENST00000417687 1192 ntBASIC20.29■□□□□ 0.84
BRF1Q92994 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC20.29■□□□□ 0.84
BRF1Q92994 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms