Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
SLC44A3Q8N4M1 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SLC44A3Q8N4M1 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC17.59■□□□□ 0.41
SLC44A3Q8N4M1 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SLC44A3Q8N4M1 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SLC44A3Q8N4M1 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.41
SLC44A3Q8N4M1 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
SLC44A3Q8N4M1 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
SLC44A3Q8N4M1 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.41
SLC44A3Q8N4M1 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
SLC44A3Q8N4M1 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
SLC44A3Q8N4M1 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
SLC44A3Q8N4M1 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SLC44A3Q8N4M1 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
SLC44A3Q8N4M1 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC17.58■□□□□ 0.4
SLC44A3Q8N4M1 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC17.58■□□□□ 0.4
SLC44A3Q8N4M1 AL512638.1-201ENST00000457493 794 ntBASIC17.58■□□□□ 0.4
SLC44A3Q8N4M1 IGHV3-42-201ENST00000520410 361 ntBASIC17.58■□□□□ 0.4
SLC44A3Q8N4M1 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC17.58■□□□□ 0.4
SLC44A3Q8N4M1 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC17.58■□□□□ 0.4
SLC44A3Q8N4M1 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
SLC44A3Q8N4M1 AL390754.1-201ENST00000619088 582 ntBASIC17.58■□□□□ 0.4
SLC44A3Q8N4M1 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.58■□□□□ 0.4
SLC44A3Q8N4M1 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.58■□□□□ 0.4
SLC44A3Q8N4M1 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.58■□□□□ 0.4
SLC44A3Q8N4M1 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SLC44A3Q8N4M1 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SLC44A3Q8N4M1 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
SLC44A3Q8N4M1 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SLC44A3Q8N4M1 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SLC44A3Q8N4M1 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SLC44A3Q8N4M1 AC093503.3-201ENST00000624917 2352 ntBASIC17.58■□□□□ 0.4
SLC44A3Q8N4M1 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC17.58■□□□□ 0.4
SLC44A3Q8N4M1 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
SLC44A3Q8N4M1 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC17.58■□□□□ 0.4
SLC44A3Q8N4M1 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SLC44A3Q8N4M1 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SLC44A3Q8N4M1 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.57■□□□□ 0.4
SLC44A3Q8N4M1 UXT-AS1-201ENST00000590504 1525 ntBASIC17.57■□□□□ 0.4
SLC44A3Q8N4M1 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SLC44A3Q8N4M1 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SLC44A3Q8N4M1 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC17.57■□□□□ 0.4
SLC44A3Q8N4M1 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SLC44A3Q8N4M1 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
SLC44A3Q8N4M1 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.57■□□□□ 0.4
SLC44A3Q8N4M1 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SLC44A3Q8N4M1 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC17.57■□□□□ 0.4
SLC44A3Q8N4M1 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC17.57■□□□□ 0.4
SLC44A3Q8N4M1 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SLC44A3Q8N4M1 HMGA1P7-201ENST00000406908 502 ntBASIC17.57■□□□□ 0.4
SLC44A3Q8N4M1 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC17.57■□□□□ 0.4
SLC44A3Q8N4M1 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC17.57■□□□□ 0.4
SLC44A3Q8N4M1 KRT8P23-201ENST00000560090 1207 ntBASIC17.57■□□□□ 0.4
SLC44A3Q8N4M1 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC17.57■□□□□ 0.4
SLC44A3Q8N4M1 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
SLC44A3Q8N4M1 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SLC44A3Q8N4M1 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
SLC44A3Q8N4M1 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SLC44A3Q8N4M1 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
SLC44A3Q8N4M1 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SLC44A3Q8N4M1 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC17.57■□□□□ 0.4
SLC44A3Q8N4M1 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC17.57■□□□□ 0.4
SLC44A3Q8N4M1 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC17.56■□□□□ 0.4
SLC44A3Q8N4M1 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SLC44A3Q8N4M1 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
SLC44A3Q8N4M1 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SLC44A3Q8N4M1 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
SLC44A3Q8N4M1 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SLC44A3Q8N4M1 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SLC44A3Q8N4M1 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.56■□□□□ 0.4
SLC44A3Q8N4M1 SPDYE7P-202ENST00000420373 878 ntBASIC17.56■□□□□ 0.4
SLC44A3Q8N4M1 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SLC44A3Q8N4M1 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SLC44A3Q8N4M1 SPDYE14P-201ENST00000442619 822 ntBASIC17.56■□□□□ 0.4
SLC44A3Q8N4M1 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SLC44A3Q8N4M1 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC17.56■□□□□ 0.4
SLC44A3Q8N4M1 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC17.56■□□□□ 0.4
SLC44A3Q8N4M1 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SLC44A3Q8N4M1 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SLC44A3Q8N4M1 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC17.56■□□□□ 0.4
SLC44A3Q8N4M1 COX11-202ENST00000571584 1108 ntTSL 2 BASIC17.56■□□□□ 0.4
SLC44A3Q8N4M1 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC17.56■□□□□ 0.4
SLC44A3Q8N4M1 HFE2-206ENST00000634927 506 ntTSL 4 BASIC17.56■□□□□ 0.4
SLC44A3Q8N4M1 AC084121.4-201ENST00000641598 221 ntBASIC17.56■□□□□ 0.4
SLC44A3Q8N4M1 AF228730.8-201ENST00000642140 221 ntBASIC17.56■□□□□ 0.4
SLC44A3Q8N4M1 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SLC44A3Q8N4M1 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SLC44A3Q8N4M1 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC17.56■□□□□ 0.4
SLC44A3Q8N4M1 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
SLC44A3Q8N4M1 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC17.56■□□□□ 0.4
SLC44A3Q8N4M1 KRT18P55-202ENST00000578578 1546 ntBASIC17.56■□□□□ 0.4
SLC44A3Q8N4M1 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC17.56■□□□□ 0.4
SLC44A3Q8N4M1 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC17.56■□□□□ 0.4
SLC44A3Q8N4M1 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.56■□□□□ 0.4
SLC44A3Q8N4M1 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SLC44A3Q8N4M1 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC17.56■□□□□ 0.4
SLC44A3Q8N4M1 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC17.56■□□□□ 0.4
SLC44A3Q8N4M1 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC17.55■□□□□ 0.4
SLC44A3Q8N4M1 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
SLC44A3Q8N4M1 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms