Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 TOM1L2-214ENST00000581396 5595 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 AC046185.3-201ENST00000623228 1824 ntBASIC10.74□□□□□ -0.69
LINC00643Q86TS7 TPO-203ENST00000346956 2923 ntTSL 5 BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 AC009090.5-201ENST00000624886 2285 ntBASIC10.74□□□□□ -0.69
LINC00643Q86TS7 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 GSN-203ENST00000373808 2664 ntTSL 2 BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 IRS1-201ENST00000305123 9705 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 KRT18P41-201ENST00000518924 1277 ntBASIC10.74□□□□□ -0.69
LINC00643Q86TS7 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 AC133561.4-201ENST00000566112 224 ntBASIC10.74□□□□□ -0.69
LINC00643Q86TS7 FGF8-207ENST00000618991 856 ntTSL 3 BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 RER1-203ENST00000378513 3000 ntTSL 3 BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC10.74□□□□□ -0.69
LINC00643Q86TS7 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms