Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
RAE1P78406 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
RAE1P78406 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
RAE1P78406 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
RAE1P78406 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
RAE1P78406 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
RAE1P78406 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
RAE1P78406 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
RAE1P78406 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
RAE1P78406 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC16.37■□□□□ 0.21
RAE1P78406 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
RAE1P78406 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
RAE1P78406 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.36■□□□□ 0.21
RAE1P78406 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RAE1P78406 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
RAE1P78406 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RAE1P78406 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RAE1P78406 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.36■□□□□ 0.21
RAE1P78406 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.36■□□□□ 0.21
RAE1P78406 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC16.36■□□□□ 0.21
RAE1P78406 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC16.36■□□□□ 0.21
RAE1P78406 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.36■□□□□ 0.21
RAE1P78406 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC16.36■□□□□ 0.21
RAE1P78406 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.36■□□□□ 0.21
RAE1P78406 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RAE1P78406 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
RAE1P78406 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
RAE1P78406 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC16.36■□□□□ 0.21
RAE1P78406 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
RAE1P78406 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RAE1P78406 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
RAE1P78406 EMD-201ENST00000369835 966 ntTSL 3 BASIC16.36■□□□□ 0.21
RAE1P78406 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RAE1P78406 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC16.36■□□□□ 0.21
RAE1P78406 LINC00982-205ENST00000420957 435 ntBASIC16.36■□□□□ 0.21
RAE1P78406 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC16.36■□□□□ 0.21
RAE1P78406 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.36■□□□□ 0.21
RAE1P78406 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC16.36■□□□□ 0.21
RAE1P78406 AC106795.1-205ENST00000512851 1056 ntBASIC16.36■□□□□ 0.21
RAE1P78406 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
RAE1P78406 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC16.36■□□□□ 0.21
RAE1P78406 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
RAE1P78406 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
RAE1P78406 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC16.36■□□□□ 0.21
RAE1P78406 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
RAE1P78406 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RAE1P78406 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RAE1P78406 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.36■□□□□ 0.21
RAE1P78406 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
RAE1P78406 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC16.36■□□□□ 0.21
RAE1P78406 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
RAE1P78406 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RAE1P78406 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
RAE1P78406 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC16.36■□□□□ 0.21
RAE1P78406 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
RAE1P78406 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC16.36■□□□□ 0.21
RAE1P78406 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RAE1P78406 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RAE1P78406 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC16.36■□□□□ 0.21
RAE1P78406 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
RAE1P78406 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC16.36■□□□□ 0.21
RAE1P78406 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
RAE1P78406 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RAE1P78406 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC16.35■□□□□ 0.21
RAE1P78406 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RAE1P78406 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
RAE1P78406 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RAE1P78406 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
RAE1P78406 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
RAE1P78406 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC16.35■□□□□ 0.21
RAE1P78406 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
RAE1P78406 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.35■□□□□ 0.21
RAE1P78406 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
RAE1P78406 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RAE1P78406 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC16.35■□□□□ 0.21
RAE1P78406 BX005266.1-201ENST00000473402 457 ntBASIC16.35■□□□□ 0.21
RAE1P78406 S100A2-206ENST00000497140 697 ntTSL 2 BASIC16.35■□□□□ 0.21
RAE1P78406 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
RAE1P78406 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC16.35■□□□□ 0.21
RAE1P78406 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC16.35■□□□□ 0.21
RAE1P78406 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC16.35■□□□□ 0.21
RAE1P78406 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RAE1P78406 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.35■□□□□ 0.21
RAE1P78406 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.35■□□□□ 0.21
RAE1P78406 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
RAE1P78406 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RAE1P78406 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RAE1P78406 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.35■□□□□ 0.21
RAE1P78406 AL118508.1-201ENST00000613502 2345 ntBASIC16.35■□□□□ 0.21
RAE1P78406 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
RAE1P78406 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
RAE1P78406 AC138932.1-201ENST00000534164 6830 ntBASIC16.35■□□□□ 0.21
RAE1P78406 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC16.35■□□□□ 0.21
RAE1P78406 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC16.35■□□□□ 0.21
RAE1P78406 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RAE1P78406 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
RAE1P78406 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RAE1P78406 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.34■□□□□ 0.21
RAE1P78406 PCDHA14-201ENST00000506751 2298 ntBASIC16.34■□□□□ 0.21
RAE1P78406 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 67.8 ms