Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
TPM4P67936 ANKRD20A8P-203ENST00000641373 517 ntBASIC19.4■□□□□ 0.7
TPM4P67936 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TPM4P67936 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC19.4■□□□□ 0.7
TPM4P67936 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
TPM4P67936 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TPM4P67936 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC19.4■□□□□ 0.7
TPM4P67936 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TPM4P67936 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TPM4P67936 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TPM4P67936 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TPM4P67936 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TPM4P67936 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC19.4■□□□□ 0.7
TPM4P67936 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TPM4P67936 ADM-208ENST00000534464 1640 ntTSL 2 BASIC19.4■□□□□ 0.7
TPM4P67936 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TPM4P67936 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TPM4P67936 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TPM4P67936 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TPM4P67936 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TPM4P67936 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TPM4P67936 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TPM4P67936 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
TPM4P67936 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
TPM4P67936 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC19.39■□□□□ 0.69
TPM4P67936 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC19.39■□□□□ 0.69
TPM4P67936 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC19.39■□□□□ 0.69
TPM4P67936 ECEL1P2-202ENST00000465689 757 ntBASIC19.39■□□□□ 0.69
TPM4P67936 AC008550.1-201ENST00000511500 884 ntBASIC19.39■□□□□ 0.69
TPM4P67936 AL355075.4-201ENST00000554988 638 ntBASIC19.39■□□□□ 0.69
TPM4P67936 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
TPM4P67936 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC19.39■□□□□ 0.69
TPM4P67936 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TPM4P67936 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC19.39■□□□□ 0.69
TPM4P67936 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
TPM4P67936 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
TPM4P67936 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC19.39■□□□□ 0.69
TPM4P67936 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
TPM4P67936 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TPM4P67936 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TPM4P67936 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
TPM4P67936 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC19.39■□□□□ 0.69
TPM4P67936 MST1L-201ENST00000442552 2185 ntBASIC19.39■□□□□ 0.69
TPM4P67936 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TPM4P67936 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TPM4P67936 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
TPM4P67936 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
TPM4P67936 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TPM4P67936 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
TPM4P67936 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
TPM4P67936 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
TPM4P67936 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TPM4P67936 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TPM4P67936 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
TPM4P67936 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
TPM4P67936 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TPM4P67936 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC19.38■□□□□ 0.69
TPM4P67936 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TPM4P67936 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TPM4P67936 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC19.38■□□□□ 0.69
TPM4P67936 CYP2D8P-201ENST00000433633 1490 ntBASIC19.38■□□□□ 0.69
TPM4P67936 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC19.38■□□□□ 0.69
TPM4P67936 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC19.38■□□□□ 0.69
TPM4P67936 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
TPM4P67936 AL391807.1-203ENST00000604392 2365 ntBASIC19.38■□□□□ 0.69
TPM4P67936 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
TPM4P67936 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TPM4P67936 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC19.38■□□□□ 0.69
TPM4P67936 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
TPM4P67936 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC19.37■□□□□ 0.69
TPM4P67936 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC19.37■□□□□ 0.69
TPM4P67936 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TPM4P67936 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
TPM4P67936 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC19.37■□□□□ 0.69
TPM4P67936 AC092053.1-201ENST00000605787 1936 ntBASIC19.37■□□□□ 0.69
TPM4P67936 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TPM4P67936 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC19.37■□□□□ 0.69
TPM4P67936 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
TPM4P67936 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC19.37■□□□□ 0.69
TPM4P67936 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC19.37■□□□□ 0.69
TPM4P67936 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC19.37■□□□□ 0.69
TPM4P67936 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC19.37■□□□□ 0.69
TPM4P67936 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TPM4P67936 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
TPM4P67936 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
TPM4P67936 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC19.37■□□□□ 0.69
TPM4P67936 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
TPM4P67936 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC19.37■□□□□ 0.69
TPM4P67936 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TPM4P67936 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
TPM4P67936 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TPM4P67936 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
TPM4P67936 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC19.37■□□□□ 0.69
TPM4P67936 CNP-204ENST00000472031 1019 ntTSL 2 BASIC19.37■□□□□ 0.69
TPM4P67936 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TPM4P67936 IGHV3-52-201ENST00000519770 353 ntBASIC19.37■□□□□ 0.69
TPM4P67936 CD81-212ENST00000526072 1172 ntTSL 5 BASIC19.37■□□□□ 0.69
TPM4P67936 AC124947.2-201ENST00000547118 1133 ntBASIC19.37■□□□□ 0.69
TPM4P67936 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC19.37■□□□□ 0.69
TPM4P67936 GCSHP2-201ENST00000560971 527 ntBASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms