Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CKS1BP61024 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CKS1BP61024 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
CKS1BP61024 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
CKS1BP61024 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC12.17□□□□□ -0.46
CKS1BP61024 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
CKS1BP61024 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
CKS1BP61024 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CKS1BP61024 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC12.17□□□□□ -0.46
CKS1BP61024 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC12.17□□□□□ -0.46
CKS1BP61024 BUB3-202ENST00000368859 667 ntTSL 3 BASIC12.17□□□□□ -0.46
CKS1BP61024 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
CKS1BP61024 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CKS1BP61024 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC12.17□□□□□ -0.46
CKS1BP61024 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC12.17□□□□□ -0.46
CKS1BP61024 FDX2-207ENST00000494368 584 ntTSL 4 BASIC12.17□□□□□ -0.46
CKS1BP61024 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
CKS1BP61024 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC12.17□□□□□ -0.46
CKS1BP61024 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
CKS1BP61024 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC12.17□□□□□ -0.46
CKS1BP61024 KLF13-207ENST00000560473 489 ntTSL 3 BASIC12.17□□□□□ -0.46
CKS1BP61024 AC009065.1-201ENST00000564055 1225 ntBASIC12.17□□□□□ -0.46
CKS1BP61024 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC12.17□□□□□ -0.46
CKS1BP61024 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC12.17□□□□□ -0.46
CKS1BP61024 RN7SL471P-201ENST00000580476 299 ntBASIC12.17□□□□□ -0.46
CKS1BP61024 AC073195.1-201ENST00000607241 877 ntBASIC12.17□□□□□ -0.46
CKS1BP61024 MIR6786-201ENST00000616843 113 ntBASIC12.17□□□□□ -0.46
CKS1BP61024 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CKS1BP61024 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC12.17□□□□□ -0.46
CKS1BP61024 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CKS1BP61024 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CKS1BP61024 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CKS1BP61024 NME9-203ENST00000383180 2133 ntTSL 2 BASIC12.17□□□□□ -0.46
CKS1BP61024 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
CKS1BP61024 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CKS1BP61024 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
CKS1BP61024 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
CKS1BP61024 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
CKS1BP61024 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
CKS1BP61024 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC12.17□□□□□ -0.46
CKS1BP61024 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
CKS1BP61024 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC12.17□□□□□ -0.46
CKS1BP61024 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC12.17□□□□□ -0.46
CKS1BP61024 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CKS1BP61024 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CKS1BP61024 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CKS1BP61024 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC12.16□□□□□ -0.46
CKS1BP61024 AC092171.3-201ENST00000610122 2651 ntBASIC12.16□□□□□ -0.46
CKS1BP61024 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CKS1BP61024 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
CKS1BP61024 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC12.16□□□□□ -0.46
CKS1BP61024 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CKS1BP61024 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CKS1BP61024 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
CKS1BP61024 AC009102.3-201ENST00000623118 1491 ntBASIC12.16□□□□□ -0.46
CKS1BP61024 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CKS1BP61024 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
CKS1BP61024 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CKS1BP61024 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CKS1BP61024 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CKS1BP61024 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
CKS1BP61024 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CKS1BP61024 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CKS1BP61024 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CKS1BP61024 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CKS1BP61024 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC12.16□□□□□ -0.46
CKS1BP61024 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
CKS1BP61024 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CKS1BP61024 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CKS1BP61024 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC12.16□□□□□ -0.46
CKS1BP61024 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.46
CKS1BP61024 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC12.16□□□□□ -0.46
CKS1BP61024 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC12.16□□□□□ -0.46
CKS1BP61024 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC12.16□□□□□ -0.46
CKS1BP61024 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC12.16□□□□□ -0.46
CKS1BP61024 CYGB-204ENST00000589342 815 ntTSL 3 BASIC12.16□□□□□ -0.46
CKS1BP61024 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC12.16□□□□□ -0.46
CKS1BP61024 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC12.16□□□□□ -0.46
CKS1BP61024 AC105020.1-201ENST00000435356 2205 ntBASIC12.16□□□□□ -0.46
CKS1BP61024 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.46
CKS1BP61024 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CKS1BP61024 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CKS1BP61024 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC12.16□□□□□ -0.46
CKS1BP61024 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
CKS1BP61024 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
CKS1BP61024 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
CKS1BP61024 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
CKS1BP61024 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
CKS1BP61024 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CKS1BP61024 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC12.16□□□□□ -0.46
CKS1BP61024 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC12.16□□□□□ -0.46
CKS1BP61024 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CKS1BP61024 HLA-DQB1-201ENST00000374943 1656 ntBASIC12.16□□□□□ -0.46
CKS1BP61024 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CKS1BP61024 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CKS1BP61024 LYSMD4-203ENST00000378904 2122 ntBASIC12.16□□□□□ -0.46
CKS1BP61024 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
CKS1BP61024 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.46
CKS1BP61024 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
CKS1BP61024 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms