Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA1P49639 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA1P49639 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA1P49639 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA1P49639 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA1P49639 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA1P49639 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
HOXA1P49639 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA1P49639 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC14.39□□□□□ -0.11
HOXA1P49639 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA1P49639 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA1P49639 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA1P49639 RBM17P1-201ENST00000453646 1190 ntBASIC14.39□□□□□ -0.11
HOXA1P49639 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC14.39□□□□□ -0.11
HOXA1P49639 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA1P49639 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA1P49639 AC098590.1-201ENST00000468126 897 ntBASIC14.39□□□□□ -0.11
HOXA1P49639 C2orf69P3-201ENST00000565542 1120 ntBASIC14.39□□□□□ -0.11
HOXA1P49639 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA1P49639 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA1P49639 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC14.39□□□□□ -0.11
HOXA1P49639 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
HOXA1P49639 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC14.39□□□□□ -0.11
HOXA1P49639 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA1P49639 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA1P49639 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
HOXA1P49639 DBET-201ENST00000630918 3363 ntBASIC14.39□□□□□ -0.11
HOXA1P49639 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA1P49639 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA1P49639 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA1P49639 AC092338.2-201ENST00000568827 1415 ntBASIC14.39□□□□□ -0.11
HOXA1P49639 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC14.39□□□□□ -0.11
HOXA1P49639 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA1P49639 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA1P49639 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA1P49639 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA1P49639 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA1P49639 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA1P49639 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC14.39□□□□□ -0.11
HOXA1P49639 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA1P49639 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA1P49639 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
HOXA1P49639 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA1P49639 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA1P49639 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA1P49639 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA1P49639 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC14.38□□□□□ -0.11
HOXA1P49639 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC14.38□□□□□ -0.11
HOXA1P49639 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA1P49639 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA1P49639 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC14.38□□□□□ -0.11
HOXA1P49639 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC14.38□□□□□ -0.11
HOXA1P49639 AC126755.1-201ENST00000525846 6405 ntBASIC14.38□□□□□ -0.11
HOXA1P49639 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA1P49639 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA1P49639 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA1P49639 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA1P49639 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA1P49639 ACE-204ENST00000428043 5120 ntTSL 2 BASIC14.38□□□□□ -0.11
HOXA1P49639 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
HOXA1P49639 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA1P49639 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA1P49639 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC14.38□□□□□ -0.11
HOXA1P49639 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC14.38□□□□□ -0.11
HOXA1P49639 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA1P49639 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC14.38□□□□□ -0.11
HOXA1P49639 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC14.38□□□□□ -0.11
HOXA1P49639 GCSHP5-201ENST00000443090 522 ntBASIC14.38□□□□□ -0.11
HOXA1P49639 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC14.38□□□□□ -0.11
HOXA1P49639 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC14.38□□□□□ -0.11
HOXA1P49639 AP000525.1-201ENST00000608286 694 ntBASIC14.38□□□□□ -0.11
HOXA1P49639 AC116407.2-201ENST00000613639 860 ntBASIC14.38□□□□□ -0.11
HOXA1P49639 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA1P49639 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA1P49639 AC132938.6-201ENST00000623828 1655 ntBASIC14.38□□□□□ -0.11
HOXA1P49639 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
HOXA1P49639 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC14.38□□□□□ -0.11
HOXA1P49639 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC14.38□□□□□ -0.11
HOXA1P49639 CICP14-201ENST00000629111 2732 ntBASIC14.38□□□□□ -0.11
HOXA1P49639 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA1P49639 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA1P49639 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
HOXA1P49639 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA1P49639 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA1P49639 AL138688.1-201ENST00000624851 1594 ntBASIC14.38□□□□□ -0.11
HOXA1P49639 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA1P49639 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC14.38□□□□□ -0.11
HOXA1P49639 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC14.38□□□□□ -0.11
HOXA1P49639 MME-217ENST00000616757 1315 ntTSL 5 BASIC14.38□□□□□ -0.11
HOXA1P49639 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC14.38□□□□□ -0.11
HOXA1P49639 AC106886.4-201ENST00000623557 2502 ntBASIC14.38□□□□□ -0.11
HOXA1P49639 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA1P49639 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA1P49639 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
HOXA1P49639 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA1P49639 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
HOXA1P49639 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC14.37□□□□□ -0.11
HOXA1P49639 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC14.37□□□□□ -0.11
HOXA1P49639 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
HOXA1P49639 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 62.9 ms