Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CDX1P47902 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC14.17□□□□□ -0.14
CDX1P47902 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CDX1P47902 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC14.17□□□□□ -0.14
CDX1P47902 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CDX1P47902 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CDX1P47902 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CDX1P47902 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CDX1P47902 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CDX1P47902 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CDX1P47902 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC14.17□□□□□ -0.14
CDX1P47902 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC14.17□□□□□ -0.14
CDX1P47902 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC14.17□□□□□ -0.14
CDX1P47902 AC092329.2-201ENST00000598402 547 ntBASIC14.17□□□□□ -0.14
CDX1P47902 AL390719.2-201ENST00000606993 987 ntBASIC14.17□□□□□ -0.14
CDX1P47902 VPS72-207ENST00000640458 689 ntTSL 5 BASIC14.17□□□□□ -0.14
CDX1P47902 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC14.17□□□□□ -0.14
CDX1P47902 MYB-201ENST00000316528 3571 ntTSL 5 BASIC14.17□□□□□ -0.14
CDX1P47902 MYB-241ENST00000616088 3573 ntTSL 5 BASIC14.17□□□□□ -0.14
CDX1P47902 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC14.17□□□□□ -0.14
CDX1P47902 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC14.17□□□□□ -0.14
CDX1P47902 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CDX1P47902 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CDX1P47902 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CDX1P47902 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CDX1P47902 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC14.17□□□□□ -0.14
CDX1P47902 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CDX1P47902 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CDX1P47902 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDX1P47902 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
CDX1P47902 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDX1P47902 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDX1P47902 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDX1P47902 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDX1P47902 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC14.16□□□□□ -0.14
CDX1P47902 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDX1P47902 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDX1P47902 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC14.16□□□□□ -0.14
CDX1P47902 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDX1P47902 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC14.16□□□□□ -0.14
CDX1P47902 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CDX1P47902 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CDX1P47902 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CDX1P47902 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
CDX1P47902 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDX1P47902 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CDX1P47902 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
CDX1P47902 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDX1P47902 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC14.16□□□□□ -0.14
CDX1P47902 AC113404.2-201ENST00000507884 177 ntBASIC14.16□□□□□ -0.14
CDX1P47902 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC14.16□□□□□ -0.14
CDX1P47902 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
CDX1P47902 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC14.16□□□□□ -0.14
CDX1P47902 F11R-206ENST00000621309 4770 ntTSL 5 BASIC14.16□□□□□ -0.14
CDX1P47902 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC14.16□□□□□ -0.14
CDX1P47902 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDX1P47902 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC14.16□□□□□ -0.14
CDX1P47902 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
CDX1P47902 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDX1P47902 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDX1P47902 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
CDX1P47902 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC14.16□□□□□ -0.14
CDX1P47902 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC14.16□□□□□ -0.14
CDX1P47902 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
CDX1P47902 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDX1P47902 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
CDX1P47902 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
CDX1P47902 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CDX1P47902 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CDX1P47902 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC14.15□□□□□ -0.14
CDX1P47902 SDHAP2-201ENST00000455183 2001 ntBASIC14.15□□□□□ -0.14
CDX1P47902 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
CDX1P47902 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CDX1P47902 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CDX1P47902 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC14.15□□□□□ -0.14
CDX1P47902 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC14.15□□□□□ -0.14
CDX1P47902 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC14.15□□□□□ -0.14
CDX1P47902 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
CDX1P47902 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
CDX1P47902 LINC02228-204ENST00000642115 2962 ntBASIC14.15□□□□□ -0.14
CDX1P47902 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CDX1P47902 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
CDX1P47902 UROS-202ENST00000368778 1556 ntTSL 2 BASIC14.15□□□□□ -0.14
CDX1P47902 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CDX1P47902 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CDX1P47902 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CDX1P47902 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC14.15□□□□□ -0.14
CDX1P47902 HES2-202ENST00000377836 507 ntTSL 2 BASIC14.15□□□□□ -0.14
CDX1P47902 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
CDX1P47902 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CDX1P47902 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CDX1P47902 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC14.15□□□□□ -0.14
CDX1P47902 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC14.15□□□□□ -0.14
CDX1P47902 GUSBP12-201ENST00000513727 720 ntBASIC14.15□□□□□ -0.14
CDX1P47902 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
CDX1P47902 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
CDX1P47902 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC14.15□□□□□ -0.14
CDX1P47902 TK1-205ENST00000590862 642 ntTSL 3 BASIC14.15□□□□□ -0.14
CDX1P47902 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC14.15□□□□□ -0.14
CDX1P47902 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms