Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
CIITAP33076 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CIITAP33076 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CIITAP33076 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CIITAP33076 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CIITAP33076 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CIITAP33076 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC19.38■□□□□ 0.69
CIITAP33076 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CIITAP33076 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CIITAP33076 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC19.38■□□□□ 0.69
CIITAP33076 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC19.38■□□□□ 0.69
CIITAP33076 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC19.38■□□□□ 0.69
CIITAP33076 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC19.38■□□□□ 0.69
CIITAP33076 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC19.38■□□□□ 0.69
CIITAP33076 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC19.38■□□□□ 0.69
CIITAP33076 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC19.38■□□□□ 0.69
CIITAP33076 AC140113.2-201ENST00000604370 208 ntBASIC19.38■□□□□ 0.69
CIITAP33076 CAND2-206ENST00000626378 333 ntTSL 5 BASIC19.38■□□□□ 0.69
CIITAP33076 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC19.38■□□□□ 0.69
CIITAP33076 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC19.38■□□□□ 0.69
CIITAP33076 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CIITAP33076 AC005332.8-201ENST00000622750 2735 ntBASIC19.38■□□□□ 0.69
CIITAP33076 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CIITAP33076 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CIITAP33076 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CIITAP33076 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC19.37■□□□□ 0.69
CIITAP33076 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CIITAP33076 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
CIITAP33076 AC026471.1-201ENST00000564629 3026 ntBASIC19.37■□□□□ 0.69
CIITAP33076 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CIITAP33076 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CIITAP33076 AC002310.6-201ENST00000624451 1377 ntBASIC19.37■□□□□ 0.69
CIITAP33076 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CIITAP33076 CRYGEP-201ENST00000412192 528 ntBASIC19.37■□□□□ 0.69
CIITAP33076 IGLL3P-201ENST00000412472 434 ntBASIC19.37■□□□□ 0.69
CIITAP33076 ATP6V0CP3-201ENST00000417255 467 ntBASIC19.37■□□□□ 0.69
CIITAP33076 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC19.37■□□□□ 0.69
CIITAP33076 AC124947.2-201ENST00000547118 1133 ntBASIC19.37■□□□□ 0.69
CIITAP33076 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC19.37■□□□□ 0.69
CIITAP33076 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CIITAP33076 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC19.37■□□□□ 0.69
CIITAP33076 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
CIITAP33076 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
CIITAP33076 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CIITAP33076 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CIITAP33076 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CIITAP33076 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
CIITAP33076 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC19.37■□□□□ 0.69
CIITAP33076 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CIITAP33076 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC19.37■□□□□ 0.69
CIITAP33076 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC19.37■□□□□ 0.69
CIITAP33076 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC19.37■□□□□ 0.69
CIITAP33076 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CIITAP33076 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CIITAP33076 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC19.36■□□□□ 0.69
CIITAP33076 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC19.36■□□□□ 0.69
CIITAP33076 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CIITAP33076 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CIITAP33076 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CIITAP33076 BANP-227ENST00000626016 2144 ntTSL 2 BASIC19.36■□□□□ 0.69
CIITAP33076 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CIITAP33076 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CIITAP33076 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CIITAP33076 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC19.36■□□□□ 0.69
CIITAP33076 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CIITAP33076 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CIITAP33076 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC19.36■□□□□ 0.69
CIITAP33076 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CIITAP33076 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CIITAP33076 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC19.36■□□□□ 0.69
CIITAP33076 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC19.36■□□□□ 0.69
CIITAP33076 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
CIITAP33076 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC19.36■□□□□ 0.69
CIITAP33076 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CIITAP33076 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC19.36■□□□□ 0.69
CIITAP33076 POLD4-207ENST00000531239 584 ntTSL 2 BASIC19.36■□□□□ 0.69
CIITAP33076 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC19.36■□□□□ 0.69
CIITAP33076 MIR4751-201ENST00000578027 74 ntBASIC19.36■□□□□ 0.69
CIITAP33076 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC19.36■□□□□ 0.69
CIITAP33076 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC19.36■□□□□ 0.69
CIITAP33076 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC19.36■□□□□ 0.69
CIITAP33076 AC064836.3-201ENST00000607928 673 ntBASIC19.36■□□□□ 0.69
CIITAP33076 REXO1L3P-201ENST00000622202 1288 ntBASIC19.36■□□□□ 0.69
CIITAP33076 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
CIITAP33076 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
CIITAP33076 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CIITAP33076 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CIITAP33076 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
CIITAP33076 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CIITAP33076 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
CIITAP33076 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
CIITAP33076 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CIITAP33076 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CIITAP33076 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CIITAP33076 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CIITAP33076 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC19.36■□□□□ 0.69
CIITAP33076 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC19.36■□□□□ 0.69
CIITAP33076 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CIITAP33076 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CIITAP33076 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms