Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXD3P31249 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXD3P31249 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
HOXD3P31249 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
HOXD3P31249 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HOXD3P31249 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HOXD3P31249 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HOXD3P31249 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC13.38□□□□□ -0.27
HOXD3P31249 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HOXD3P31249 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXD3P31249 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXD3P31249 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXD3P31249 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC13.38□□□□□ -0.27
HOXD3P31249 BEX3-201ENST00000361298 921 ntTSL 2 BASIC13.38□□□□□ -0.27
HOXD3P31249 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXD3P31249 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HOXD3P31249 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXD3P31249 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC13.38□□□□□ -0.27
HOXD3P31249 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC13.38□□□□□ -0.27
HOXD3P31249 LAGE3P1-201ENST00000425356 484 ntBASIC13.38□□□□□ -0.27
HOXD3P31249 PRYP5-201ENST00000451909 266 ntBASIC13.38□□□□□ -0.27
HOXD3P31249 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HOXD3P31249 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC13.38□□□□□ -0.27
HOXD3P31249 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC13.38□□□□□ -0.27
HOXD3P31249 AC112482.1-201ENST00000492080 688 ntBASIC13.38□□□□□ -0.27
HOXD3P31249 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC13.38□□□□□ -0.27
HOXD3P31249 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
HOXD3P31249 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC13.38□□□□□ -0.27
HOXD3P31249 MIR1199-201ENST00000621445 119 ntBASIC13.38□□□□□ -0.27
HOXD3P31249 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXD3P31249 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXD3P31249 AC046185.3-201ENST00000623228 1824 ntBASIC13.38□□□□□ -0.27
HOXD3P31249 AL133373.2-201ENST00000623187 2828 ntBASIC13.38□□□□□ -0.27
HOXD3P31249 LETM1P2-201ENST00000597330 2178 ntBASIC13.38□□□□□ -0.27
HOXD3P31249 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXD3P31249 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC13.38□□□□□ -0.27
HOXD3P31249 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC13.38□□□□□ -0.27
HOXD3P31249 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXD3P31249 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HOXD3P31249 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXD3P31249 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
HOXD3P31249 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC13.37□□□□□ -0.27
HOXD3P31249 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
HOXD3P31249 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
HOXD3P31249 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC13.37□□□□□ -0.27
HOXD3P31249 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC13.37□□□□□ -0.27
HOXD3P31249 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD3P31249 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC13.37□□□□□ -0.27
HOXD3P31249 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD3P31249 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD3P31249 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD3P31249 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD3P31249 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
HOXD3P31249 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD3P31249 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC13.37□□□□□ -0.27
HOXD3P31249 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD3P31249 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD3P31249 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD3P31249 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC13.37□□□□□ -0.27
HOXD3P31249 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC13.37□□□□□ -0.27
HOXD3P31249 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD3P31249 DNAJB3-201ENST00000446806 729 ntBASIC13.37□□□□□ -0.27
HOXD3P31249 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC13.37□□□□□ -0.27
HOXD3P31249 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC13.37□□□□□ -0.27
HOXD3P31249 HOTTIP_1.1-201ENST00000620415 57 ntBASIC13.37□□□□□ -0.27
HOXD3P31249 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD3P31249 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD3P31249 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC13.37□□□□□ -0.27
HOXD3P31249 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD3P31249 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD3P31249 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD3P31249 AC068880.1-201ENST00000507289 2297 ntBASIC13.37□□□□□ -0.27
HOXD3P31249 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC13.37□□□□□ -0.27
HOXD3P31249 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD3P31249 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC13.36□□□□□ -0.27
HOXD3P31249 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC13.36□□□□□ -0.27
HOXD3P31249 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC13.36□□□□□ -0.27
HOXD3P31249 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
HOXD3P31249 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HOXD3P31249 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HOXD3P31249 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HOXD3P31249 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
HOXD3P31249 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
HOXD3P31249 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC13.36□□□□□ -0.27
HOXD3P31249 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
HOXD3P31249 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC13.36□□□□□ -0.27
HOXD3P31249 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HOXD3P31249 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC13.36□□□□□ -0.27
HOXD3P31249 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC13.36□□□□□ -0.27
HOXD3P31249 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
HOXD3P31249 IMP4-203ENST00000409935 958 ntTSL 5 BASIC13.36□□□□□ -0.27
HOXD3P31249 CRCP-205ENST00000431089 942 ntTSL 2 BASIC13.36□□□□□ -0.27
HOXD3P31249 AC009947.1-201ENST00000444350 727 ntBASIC13.36□□□□□ -0.27
HOXD3P31249 AC004967.1-201ENST00000453589 447 ntBASIC13.36□□□□□ -0.27
HOXD3P31249 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC13.36□□□□□ -0.27
HOXD3P31249 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC13.36□□□□□ -0.27
HOXD3P31249 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HOXD3P31249 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC13.36□□□□□ -0.27
HOXD3P31249 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC13.36□□□□□ -0.27
HOXD3P31249 CYB561-217ENST00000582997 877 ntTSL 5 BASIC13.36□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 67.3 ms