Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
RXRBP28702 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
RXRBP28702 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
RXRBP28702 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC22.3■■□□□ 1.16
RXRBP28702 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
RXRBP28702 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC22.3■■□□□ 1.16
RXRBP28702 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC22.3■■□□□ 1.16
RXRBP28702 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
RXRBP28702 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC22.3■■□□□ 1.16
RXRBP28702 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
RXRBP28702 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
RXRBP28702 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC22.3■■□□□ 1.16
RXRBP28702 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
RXRBP28702 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC22.3■■□□□ 1.16
RXRBP28702 FXNP2-201ENST00000411625 547 ntBASIC22.3■■□□□ 1.16
RXRBP28702 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
RXRBP28702 AC098850.1-201ENST00000419919 790 ntBASIC22.3■■□□□ 1.16
RXRBP28702 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC22.3■■□□□ 1.16
RXRBP28702 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC22.3■■□□□ 1.16
RXRBP28702 RAB35-202ENST00000534951 939 ntTSL 2 BASIC22.3■■□□□ 1.16
RXRBP28702 AL079307.3-201ENST00000556114 283 ntBASIC22.3■■□□□ 1.16
RXRBP28702 AC044860.1-202ENST00000559481 777 ntBASIC22.3■■□□□ 1.16
RXRBP28702 AC073389.1-201ENST00000595595 795 ntBASIC22.3■■□□□ 1.16
RXRBP28702 AL033527.5-201ENST00000641382 801 ntBASIC22.3■■□□□ 1.16
RXRBP28702 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
RXRBP28702 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC22.3■■□□□ 1.16
RXRBP28702 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
RXRBP28702 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
RXRBP28702 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
RXRBP28702 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC22.3■■□□□ 1.16
RXRBP28702 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC22.3■■□□□ 1.16
RXRBP28702 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC22.3■■□□□ 1.16
RXRBP28702 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC22.29■■□□□ 1.16
RXRBP28702 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
RXRBP28702 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
RXRBP28702 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
RXRBP28702 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
RXRBP28702 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
RXRBP28702 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
RXRBP28702 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
RXRBP28702 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
RXRBP28702 AC114501.2-201ENST00000439631 535 ntBASIC22.29■■□□□ 1.16
RXRBP28702 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
RXRBP28702 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC22.29■■□□□ 1.16
RXRBP28702 ZNF767P-206ENST00000513792 565 ntBASIC22.29■■□□□ 1.16
RXRBP28702 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC22.29■■□□□ 1.16
RXRBP28702 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC22.29■■□□□ 1.16
RXRBP28702 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC22.29■■□□□ 1.16
RXRBP28702 SRD5A3P1-201ENST00000603021 949 ntBASIC22.29■■□□□ 1.16
RXRBP28702 TEX48-202ENST00000612244 662 ntTSL 3 BASIC22.29■■□□□ 1.16
RXRBP28702 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
RXRBP28702 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
RXRBP28702 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
RXRBP28702 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
RXRBP28702 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
RXRBP28702 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC22.28■■□□□ 1.16
RXRBP28702 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
RXRBP28702 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
RXRBP28702 RPS19-201ENST00000221975 500 ntTSL 3 BASIC22.28■■□□□ 1.16
RXRBP28702 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
RXRBP28702 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC22.28■■□□□ 1.16
RXRBP28702 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC22.28■■□□□ 1.16
RXRBP28702 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
RXRBP28702 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
RXRBP28702 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
RXRBP28702 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
RXRBP28702 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC22.28■■□□□ 1.16
RXRBP28702 FAM21FP-201ENST00000426241 1131 ntBASIC22.28■■□□□ 1.16
RXRBP28702 CSF2RBP1-201ENST00000447905 391 ntBASIC22.28■■□□□ 1.16
RXRBP28702 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC22.28■■□□□ 1.16
RXRBP28702 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC22.28■■□□□ 1.16
RXRBP28702 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC22.28■■□□□ 1.16
RXRBP28702 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
RXRBP28702 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC22.28■■□□□ 1.16
RXRBP28702 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC22.28■■□□□ 1.16
RXRBP28702 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC22.28■■□□□ 1.16
RXRBP28702 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
RXRBP28702 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
RXRBP28702 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
RXRBP28702 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
RXRBP28702 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC22.28■■□□□ 1.16
RXRBP28702 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
RXRBP28702 AL353732.1-201ENST00000569618 1459 ntBASIC22.28■■□□□ 1.16
RXRBP28702 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
RXRBP28702 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
RXRBP28702 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC22.27■■□□□ 1.16
RXRBP28702 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC22.27■■□□□ 1.16
RXRBP28702 AC018665.1-201ENST00000622927 1362 ntBASIC22.27■■□□□ 1.16
RXRBP28702 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC22.27■■□□□ 1.16
RXRBP28702 AC046185.3-201ENST00000623228 1824 ntBASIC22.27■■□□□ 1.16
RXRBP28702 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
RXRBP28702 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
RXRBP28702 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
RXRBP28702 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC22.27■■□□□ 1.16
RXRBP28702 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC22.27■■□□□ 1.16
RXRBP28702 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
RXRBP28702 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
RXRBP28702 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC22.27■■□□□ 1.16
RXRBP28702 AC007551.1-201ENST00000457394 519 ntBASIC22.27■■□□□ 1.16
RXRBP28702 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC22.27■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms