Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
SMARCA1P28370 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SMARCA1P28370 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC19.73■□□□□ 0.75
SMARCA1P28370 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SMARCA1P28370 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
SMARCA1P28370 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC19.73■□□□□ 0.75
SMARCA1P28370 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
SMARCA1P28370 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SMARCA1P28370 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMARCA1P28370 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC19.72■□□□□ 0.75
SMARCA1P28370 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
SMARCA1P28370 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMARCA1P28370 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMARCA1P28370 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMARCA1P28370 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMARCA1P28370 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC19.72■□□□□ 0.75
SMARCA1P28370 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMARCA1P28370 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC19.72■□□□□ 0.75
SMARCA1P28370 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC19.72■□□□□ 0.75
SMARCA1P28370 RHOQP3-201ENST00000437982 621 ntBASIC19.72■□□□□ 0.75
SMARCA1P28370 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC19.72■□□□□ 0.75
SMARCA1P28370 POLD4-207ENST00000531239 584 ntTSL 2 BASIC19.72■□□□□ 0.75
SMARCA1P28370 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC19.72■□□□□ 0.75
SMARCA1P28370 AC096734.2-201ENST00000562054 433 ntBASIC19.72■□□□□ 0.75
SMARCA1P28370 MIR4751-201ENST00000578027 74 ntBASIC19.72■□□□□ 0.75
SMARCA1P28370 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC19.72■□□□□ 0.75
SMARCA1P28370 AC140113.2-201ENST00000604370 208 ntBASIC19.72■□□□□ 0.75
SMARCA1P28370 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
SMARCA1P28370 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC19.72■□□□□ 0.75
SMARCA1P28370 CEP83-AS1-201ENST00000623122 2482 ntBASIC19.72■□□□□ 0.75
SMARCA1P28370 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMARCA1P28370 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SMARCA1P28370 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMARCA1P28370 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SMARCA1P28370 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMARCA1P28370 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
SMARCA1P28370 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SMARCA1P28370 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SMARCA1P28370 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SMARCA1P28370 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SMARCA1P28370 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMARCA1P28370 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMARCA1P28370 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMARCA1P28370 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
SMARCA1P28370 IGLL3P-201ENST00000412472 434 ntBASIC19.71■□□□□ 0.75
SMARCA1P28370 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
SMARCA1P28370 HNRNPA1P28-201ENST00000424481 961 ntBASIC19.71■□□□□ 0.75
SMARCA1P28370 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC19.71■□□□□ 0.75
SMARCA1P28370 KRT18P3-201ENST00000451602 1288 ntBASIC19.71■□□□□ 0.75
SMARCA1P28370 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
SMARCA1P28370 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC19.71■□□□□ 0.75
SMARCA1P28370 AC107918.2-201ENST00000530817 355 ntBASIC19.71■□□□□ 0.75
SMARCA1P28370 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMARCA1P28370 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC19.71■□□□□ 0.75
SMARCA1P28370 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC19.71■□□□□ 0.75
SMARCA1P28370 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC19.71■□□□□ 0.75
SMARCA1P28370 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC19.71■□□□□ 0.75
SMARCA1P28370 AC064836.3-201ENST00000607928 673 ntBASIC19.71■□□□□ 0.75
SMARCA1P28370 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC19.71■□□□□ 0.75
SMARCA1P28370 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMARCA1P28370 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMARCA1P28370 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SMARCA1P28370 FOS-208ENST00000555686 1496 ntTSL 2 BASIC19.71■□□□□ 0.75
SMARCA1P28370 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SMARCA1P28370 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SMARCA1P28370 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC19.71■□□□□ 0.75
SMARCA1P28370 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMARCA1P28370 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC19.71■□□□□ 0.75
SMARCA1P28370 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
SMARCA1P28370 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMARCA1P28370 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SMARCA1P28370 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SMARCA1P28370 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMARCA1P28370 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.74
SMARCA1P28370 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC19.71■□□□□ 0.74
SMARCA1P28370 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
SMARCA1P28370 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SMARCA1P28370 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC19.7■□□□□ 0.74
SMARCA1P28370 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
SMARCA1P28370 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC19.7■□□□□ 0.74
SMARCA1P28370 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SMARCA1P28370 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SMARCA1P28370 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SMARCA1P28370 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC19.7■□□□□ 0.74
SMARCA1P28370 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SMARCA1P28370 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SMARCA1P28370 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC19.7■□□□□ 0.74
SMARCA1P28370 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SMARCA1P28370 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC19.7■□□□□ 0.74
SMARCA1P28370 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SMARCA1P28370 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC19.7■□□□□ 0.74
SMARCA1P28370 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SMARCA1P28370 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
SMARCA1P28370 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC19.7■□□□□ 0.74
SMARCA1P28370 CXCL1P1-201ENST00000502804 216 ntBASIC19.7■□□□□ 0.74
SMARCA1P28370 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC19.7■□□□□ 0.74
SMARCA1P28370 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SMARCA1P28370 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SMARCA1P28370 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SMARCA1P28370 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms