Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC16.46■□□□□ 0.23
SDC1P18827 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SDC1P18827 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
SDC1P18827 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SDC1P18827 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
SDC1P18827 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.45■□□□□ 0.22
SDC1P18827 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC16.45■□□□□ 0.22
SDC1P18827 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
SDC1P18827 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
SDC1P18827 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
SDC1P18827 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
SDC1P18827 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
SDC1P18827 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SDC1P18827 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.45■□□□□ 0.22
SDC1P18827 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.45■□□□□ 0.22
SDC1P18827 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SDC1P18827 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.45■□□□□ 0.22
SDC1P18827 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
SDC1P18827 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC16.45■□□□□ 0.22
SDC1P18827 RCN1P2-201ENST00000398357 915 ntBASIC16.45■□□□□ 0.22
SDC1P18827 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
SDC1P18827 IGHV3-47-201ENST00000425060 335 ntBASIC16.45■□□□□ 0.22
SDC1P18827 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC16.45■□□□□ 0.22
SDC1P18827 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC16.45■□□□□ 0.22
SDC1P18827 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC16.45■□□□□ 0.22
SDC1P18827 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC16.45■□□□□ 0.22
SDC1P18827 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC16.45■□□□□ 0.22
SDC1P18827 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
SDC1P18827 DBP-204ENST00000599385 709 ntTSL 3 BASIC16.45■□□□□ 0.22
SDC1P18827 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
SDC1P18827 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC16.45■□□□□ 0.22
SDC1P18827 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SDC1P18827 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
SDC1P18827 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC16.45■□□□□ 0.22
SDC1P18827 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.45■□□□□ 0.22
SDC1P18827 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
SDC1P18827 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SDC1P18827 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SDC1P18827 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC16.45■□□□□ 0.22
SDC1P18827 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC16.45■□□□□ 0.22
SDC1P18827 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SDC1P18827 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC16.45■□□□□ 0.22
SDC1P18827 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SDC1P18827 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
SDC1P18827 FRMD8P1-201ENST00000440433 1524 ntBASIC16.45■□□□□ 0.22
SDC1P18827 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
SDC1P18827 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SDC1P18827 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SDC1P18827 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC16.45■□□□□ 0.22
SDC1P18827 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDC1P18827 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDC1P18827 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDC1P18827 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDC1P18827 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC16.44■□□□□ 0.22
SDC1P18827 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDC1P18827 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDC1P18827 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDC1P18827 PMPCAP1-201ENST00000508114 1576 ntBASIC16.44■□□□□ 0.22
SDC1P18827 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDC1P18827 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDC1P18827 GPR89P-201ENST00000407924 1495 ntBASIC16.44■□□□□ 0.22
SDC1P18827 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SDC1P18827 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC16.44■□□□□ 0.22
SDC1P18827 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDC1P18827 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDC1P18827 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SDC1P18827 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
SDC1P18827 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SDC1P18827 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
SDC1P18827 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC16.44■□□□□ 0.22
SDC1P18827 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SDC1P18827 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
SDC1P18827 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDC1P18827 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.44■□□□□ 0.22
SDC1P18827 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC16.44■□□□□ 0.22
SDC1P18827 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SDC1P18827 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC16.44■□□□□ 0.22
SDC1P18827 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC16.44■□□□□ 0.22
SDC1P18827 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC16.44■□□□□ 0.22
SDC1P18827 AL590326.2-201ENST00000625139 305 ntBASIC16.44■□□□□ 0.22
SDC1P18827 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
SDC1P18827 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SDC1P18827 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC16.44■□□□□ 0.22
SDC1P18827 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
SDC1P18827 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDC1P18827 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDC1P18827 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDC1P18827 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDC1P18827 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
SDC1P18827 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.44■□□□□ 0.22
SDC1P18827 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC16.44■□□□□ 0.22
SDC1P18827 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC16.44■□□□□ 0.22
SDC1P18827 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SDC1P18827 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC16.44■□□□□ 0.22
SDC1P18827 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
SDC1P18827 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDC1P18827 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDC1P18827 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SDC1P18827 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDC1P18827 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms