Protein–RNA interactions for Protein: P16234

PDGFRA, Platelet-derived growth factor receptor alpha, humanhuman

Predictions only

Length 1,089 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRAP16234 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
PDGFRAP16234 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PDGFRAP16234 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC18.15■□□□□ 0.5
PDGFRAP16234 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
PDGFRAP16234 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC18.15■□□□□ 0.5
PDGFRAP16234 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PDGFRAP16234 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC18.15■□□□□ 0.5
PDGFRAP16234 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC18.14■□□□□ 0.5
PDGFRAP16234 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
PDGFRAP16234 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
PDGFRAP16234 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PDGFRAP16234 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
PDGFRAP16234 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC18.14■□□□□ 0.49
PDGFRAP16234 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC18.14■□□□□ 0.49
PDGFRAP16234 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
PDGFRAP16234 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
PDGFRAP16234 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PDGFRAP16234 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PDGFRAP16234 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PDGFRAP16234 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC18.14■□□□□ 0.49
PDGFRAP16234 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC18.14■□□□□ 0.49
PDGFRAP16234 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PDGFRAP16234 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PDGFRAP16234 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PDGFRAP16234 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC18.14■□□□□ 0.49
PDGFRAP16234 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PDGFRAP16234 AC009078.2-202ENST00000463353 338 ntBASIC18.14■□□□□ 0.49
PDGFRAP16234 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC18.14■□□□□ 0.49
PDGFRAP16234 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PDGFRAP16234 AL160237.2-201ENST00000556165 472 ntBASIC18.14■□□□□ 0.49
PDGFRAP16234 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC18.14■□□□□ 0.49
PDGFRAP16234 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PDGFRAP16234 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC18.14■□□□□ 0.49
PDGFRAP16234 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
PDGFRAP16234 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
PDGFRAP16234 AC020916.1-201ENST00000587762 1774 ntBASIC18.14■□□□□ 0.49
PDGFRAP16234 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
PDGFRAP16234 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
PDGFRAP16234 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
PDGFRAP16234 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
PDGFRAP16234 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
PDGFRAP16234 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PDGFRAP16234 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
PDGFRAP16234 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PDGFRAP16234 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC18.13■□□□□ 0.49
PDGFRAP16234 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
PDGFRAP16234 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC18.13■□□□□ 0.49
PDGFRAP16234 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PDGFRAP16234 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PDGFRAP16234 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PDGFRAP16234 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
PDGFRAP16234 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PDGFRAP16234 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PDGFRAP16234 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PDGFRAP16234 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC18.13■□□□□ 0.49
PDGFRAP16234 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PDGFRAP16234 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PDGFRAP16234 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
PDGFRAP16234 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PDGFRAP16234 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC18.13■□□□□ 0.49
PDGFRAP16234 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC18.13■□□□□ 0.49
PDGFRAP16234 AP002469.2-201ENST00000531724 424 ntBASIC18.13■□□□□ 0.49
PDGFRAP16234 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC18.13■□□□□ 0.49
PDGFRAP16234 AL355877.3-201ENST00000622820 899 ntBASIC18.13■□□□□ 0.49
PDGFRAP16234 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC18.13■□□□□ 0.49
PDGFRAP16234 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PDGFRAP16234 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
PDGFRAP16234 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC18.13■□□□□ 0.49
PDGFRAP16234 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC18.13■□□□□ 0.49
PDGFRAP16234 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PDGFRAP16234 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
PDGFRAP16234 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PDGFRAP16234 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PDGFRAP16234 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PDGFRAP16234 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
PDGFRAP16234 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
PDGFRAP16234 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC18.13■□□□□ 0.49
PDGFRAP16234 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
PDGFRAP16234 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
PDGFRAP16234 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PDGFRAP16234 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PDGFRAP16234 AC097637.2-201ENST00000624096 1997 ntBASIC18.12■□□□□ 0.49
PDGFRAP16234 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PDGFRAP16234 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PDGFRAP16234 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PDGFRAP16234 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PDGFRAP16234 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PDGFRAP16234 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC18.12■□□□□ 0.49
PDGFRAP16234 BX005266.1-201ENST00000473402 457 ntBASIC18.12■□□□□ 0.49
PDGFRAP16234 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
PDGFRAP16234 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC18.12■□□□□ 0.49
PDGFRAP16234 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC18.12■□□□□ 0.49
PDGFRAP16234 CYB561-217ENST00000582997 877 ntTSL 5 BASIC18.12■□□□□ 0.49
PDGFRAP16234 NKAPP1-205ENST00000585790 367 ntBASIC18.12■□□□□ 0.49
PDGFRAP16234 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC18.12■□□□□ 0.49
PDGFRAP16234 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
PDGFRAP16234 TP73-AS1-207ENST00000624167 988 ntBASIC18.12■□□□□ 0.49
PDGFRAP16234 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
PDGFRAP16234 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
PDGFRAP16234 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms