Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGB1P09429 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
HMGB1P09429 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGB1P09429 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC20.37■□□□□ 0.85
HMGB1P09429 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
HMGB1P09429 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGB1P09429 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HMGB1P09429 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
HMGB1P09429 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HMGB1P09429 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
HMGB1P09429 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
HMGB1P09429 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HMGB1P09429 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
HMGB1P09429 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC20.36■□□□□ 0.85
HMGB1P09429 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
HMGB1P09429 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC20.36■□□□□ 0.85
HMGB1P09429 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
HMGB1P09429 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HMGB1P09429 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HMGB1P09429 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
HMGB1P09429 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
HMGB1P09429 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HMGB1P09429 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
HMGB1P09429 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HMGB1P09429 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC20.36■□□□□ 0.85
HMGB1P09429 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HMGB1P09429 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HMGB1P09429 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
HMGB1P09429 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC20.36■□□□□ 0.85
HMGB1P09429 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC20.36■□□□□ 0.85
HMGB1P09429 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC20.36■□□□□ 0.85
HMGB1P09429 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC20.36■□□□□ 0.85
HMGB1P09429 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC20.36■□□□□ 0.85
HMGB1P09429 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC20.36■□□□□ 0.85
HMGB1P09429 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC20.36■□□□□ 0.85
HMGB1P09429 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC20.36■□□□□ 0.85
HMGB1P09429 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC20.36■□□□□ 0.85
HMGB1P09429 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC20.36■□□□□ 0.85
HMGB1P09429 NKAPP1-205ENST00000585790 367 ntBASIC20.36■□□□□ 0.85
HMGB1P09429 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC20.36■□□□□ 0.85
HMGB1P09429 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
HMGB1P09429 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC20.36■□□□□ 0.85
HMGB1P09429 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HMGB1P09429 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
HMGB1P09429 FRMD8P1-201ENST00000440433 1524 ntBASIC20.36■□□□□ 0.85
HMGB1P09429 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC20.36■□□□□ 0.85
HMGB1P09429 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
HMGB1P09429 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC20.36■□□□□ 0.85
HMGB1P09429 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
HMGB1P09429 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HMGB1P09429 PAN3-AS1-201ENST00000563843 1351 ntBASIC20.35■□□□□ 0.85
HMGB1P09429 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HMGB1P09429 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
HMGB1P09429 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
HMGB1P09429 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HMGB1P09429 BX005266.1-201ENST00000473402 457 ntBASIC20.35■□□□□ 0.85
HMGB1P09429 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC20.35■□□□□ 0.85
HMGB1P09429 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
HMGB1P09429 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
HMGB1P09429 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
HMGB1P09429 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
HMGB1P09429 NCF1C-201ENST00000438382 1427 ntBASIC20.35■□□□□ 0.85
HMGB1P09429 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HMGB1P09429 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HMGB1P09429 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
HMGB1P09429 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC20.34■□□□□ 0.85
HMGB1P09429 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HMGB1P09429 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC20.34■□□□□ 0.85
HMGB1P09429 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
HMGB1P09429 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC20.34■□□□□ 0.85
HMGB1P09429 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HMGB1P09429 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HMGB1P09429 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HMGB1P09429 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HMGB1P09429 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HMGB1P09429 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
HMGB1P09429 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
HMGB1P09429 SCARNA2-201ENST00000458748 420 ntBASIC20.34■□□□□ 0.85
HMGB1P09429 SDHD-206ENST00000528182 754 ntTSL 3 BASIC20.34■□□□□ 0.85
HMGB1P09429 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
HMGB1P09429 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HMGB1P09429 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC20.34■□□□□ 0.85
HMGB1P09429 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC20.34■□□□□ 0.85
HMGB1P09429 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC20.34■□□□□ 0.85
HMGB1P09429 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
HMGB1P09429 CLEC4GP1-201ENST00000596555 870 ntBASIC20.34■□□□□ 0.85
HMGB1P09429 AC008608.2-201ENST00000606089 416 ntBASIC20.34■□□□□ 0.85
HMGB1P09429 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC20.34■□□□□ 0.85
HMGB1P09429 AL589182.2-201ENST00000619332 1049 ntBASIC20.34■□□□□ 0.85
HMGB1P09429 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
HMGB1P09429 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HMGB1P09429 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
HMGB1P09429 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
HMGB1P09429 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC20.34■□□□□ 0.85
HMGB1P09429 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
HMGB1P09429 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HMGB1P09429 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC20.34■□□□□ 0.85
HMGB1P09429 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC20.34■□□□□ 0.85
HMGB1P09429 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
HMGB1P09429 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms