Protein–RNA interactions for Protein: P02708

CHRNA1, Acetylcholine receptor subunit alpha, humanhuman

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1P02708 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CHRNA1P02708 HLA-DRB6-201ENST00000411500 1235 ntBASIC18.66■□□□□ 0.58
CHRNA1P02708 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC18.66■□□□□ 0.58
CHRNA1P02708 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC18.66■□□□□ 0.58
CHRNA1P02708 SLBP-205ENST00000488267 987 ntTSL 2 BASIC18.66■□□□□ 0.58
CHRNA1P02708 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CHRNA1P02708 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CHRNA1P02708 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CHRNA1P02708 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CHRNA1P02708 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CHRNA1P02708 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.66■□□□□ 0.58
CHRNA1P02708 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC18.66■□□□□ 0.58
CHRNA1P02708 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC18.66■□□□□ 0.58
CHRNA1P02708 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
CHRNA1P02708 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHRNA1P02708 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC18.66■□□□□ 0.58
CHRNA1P02708 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC18.66■□□□□ 0.58
CHRNA1P02708 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHRNA1P02708 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CHRNA1P02708 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.65■□□□□ 0.58
CHRNA1P02708 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.65■□□□□ 0.58
CHRNA1P02708 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.65■□□□□ 0.58
CHRNA1P02708 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC18.65■□□□□ 0.58
CHRNA1P02708 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC18.65■□□□□ 0.58
CHRNA1P02708 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHRNA1P02708 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHRNA1P02708 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.65■□□□□ 0.58
CHRNA1P02708 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHRNA1P02708 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.65■□□□□ 0.58
CHRNA1P02708 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CHRNA1P02708 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHRNA1P02708 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHRNA1P02708 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHRNA1P02708 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHRNA1P02708 CD99-202ENST00000381180 530 ntTSL 2 BASIC18.65■□□□□ 0.58
CHRNA1P02708 AC005237.2-201ENST00000434368 219 ntBASIC18.65■□□□□ 0.58
CHRNA1P02708 AL592309.1-201ENST00000443127 649 ntBASIC18.65■□□□□ 0.58
CHRNA1P02708 BCRP1-201ENST00000444246 691 ntBASIC18.65■□□□□ 0.58
CHRNA1P02708 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC18.65■□□□□ 0.58
CHRNA1P02708 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC18.65■□□□□ 0.58
CHRNA1P02708 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC18.65■□□□□ 0.58
CHRNA1P02708 DUX4L17-201ENST00000557360 1267 ntBASIC18.65■□□□□ 0.58
CHRNA1P02708 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC18.65■□□□□ 0.58
CHRNA1P02708 AC005498.2-205ENST00000593218 784 ntBASIC18.65■□□□□ 0.58
CHRNA1P02708 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHRNA1P02708 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CHRNA1P02708 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.65■□□□□ 0.58
CHRNA1P02708 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
CHRNA1P02708 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CHRNA1P02708 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC18.65■□□□□ 0.58
CHRNA1P02708 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC18.65■□□□□ 0.58
CHRNA1P02708 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHRNA1P02708 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC18.65■□□□□ 0.58
CHRNA1P02708 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHRNA1P02708 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHRNA1P02708 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHRNA1P02708 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CHRNA1P02708 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC18.64■□□□□ 0.58
CHRNA1P02708 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
CHRNA1P02708 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
CHRNA1P02708 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CHRNA1P02708 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CHRNA1P02708 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CHRNA1P02708 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CHRNA1P02708 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CHRNA1P02708 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CHRNA1P02708 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CHRNA1P02708 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CHRNA1P02708 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CHRNA1P02708 FAM58DP-201ENST00000428076 619 ntBASIC18.64■□□□□ 0.57
CHRNA1P02708 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC18.64■□□□□ 0.57
CHRNA1P02708 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC18.64■□□□□ 0.57
CHRNA1P02708 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
CHRNA1P02708 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CHRNA1P02708 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC18.64■□□□□ 0.57
CHRNA1P02708 AL135744.1-201ENST00000565098 629 ntBASIC18.64■□□□□ 0.57
CHRNA1P02708 INO80E-210ENST00000567705 880 ntTSL 3 BASIC18.64■□□□□ 0.57
CHRNA1P02708 AC005412.3-201ENST00000580309 715 ntBASIC18.64■□□□□ 0.57
CHRNA1P02708 AL096865.1-201ENST00000606796 927 ntBASIC18.64■□□□□ 0.57
CHRNA1P02708 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
CHRNA1P02708 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC18.64■□□□□ 0.57
CHRNA1P02708 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC18.64■□□□□ 0.57
CHRNA1P02708 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CHRNA1P02708 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
CHRNA1P02708 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC18.64■□□□□ 0.57
CHRNA1P02708 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CHRNA1P02708 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CHRNA1P02708 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CHRNA1P02708 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CHRNA1P02708 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC18.64■□□□□ 0.57
CHRNA1P02708 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
CHRNA1P02708 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.64■□□□□ 0.57
CHRNA1P02708 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CHRNA1P02708 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CHRNA1P02708 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CHRNA1P02708 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
CHRNA1P02708 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
CHRNA1P02708 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC18.63■□□□□ 0.57
CHRNA1P02708 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHRNA1P02708 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms