Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CACNA1FO60840 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CACNA1FO60840 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
CACNA1FO60840 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC21.51■■□□□ 1.03
CACNA1FO60840 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC21.51■■□□□ 1.03
CACNA1FO60840 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CACNA1FO60840 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
CACNA1FO60840 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
CACNA1FO60840 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
CACNA1FO60840 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC21.5■■□□□ 1.03
CACNA1FO60840 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CACNA1FO60840 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CACNA1FO60840 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC21.5■■□□□ 1.03
CACNA1FO60840 AL078644.1-201ENST00000609881 752 ntBASIC21.5■■□□□ 1.03
CACNA1FO60840 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC21.5■■□□□ 1.03
CACNA1FO60840 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
CACNA1FO60840 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CACNA1FO60840 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
CACNA1FO60840 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC21.5■■□□□ 1.03
CACNA1FO60840 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
CACNA1FO60840 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC21.5■■□□□ 1.03
CACNA1FO60840 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CACNA1FO60840 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
CACNA1FO60840 HMGA1P7-201ENST00000406908 502 ntBASIC21.5■■□□□ 1.03
CACNA1FO60840 CDK2AP2P3-201ENST00000422476 372 ntBASIC21.5■■□□□ 1.03
CACNA1FO60840 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC21.5■■□□□ 1.03
CACNA1FO60840 SMN2-210ENST00000511812 867 ntTSL 2 BASIC21.5■■□□□ 1.03
CACNA1FO60840 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC21.5■■□□□ 1.03
CACNA1FO60840 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
CACNA1FO60840 PUS1-205ENST00000535067 838 ntTSL 3 BASIC21.5■■□□□ 1.03
CACNA1FO60840 AC087641.1-201ENST00000557561 1021 ntBASIC21.5■■□□□ 1.03
CACNA1FO60840 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC21.5■■□□□ 1.03
CACNA1FO60840 CYP2A7P1-201ENST00000595391 815 ntBASIC21.5■■□□□ 1.03
CACNA1FO60840 C20orf181-201ENST00000623918 480 ntBASIC21.5■■□□□ 1.03
CACNA1FO60840 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CACNA1FO60840 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CACNA1FO60840 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC21.5■■□□□ 1.03
CACNA1FO60840 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CACNA1FO60840 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.49■■□□□ 1.03
CACNA1FO60840 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CACNA1FO60840 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
CACNA1FO60840 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CACNA1FO60840 COA5-202ENST00000409997 557 ntTSL 4 BASIC21.49■■□□□ 1.03
CACNA1FO60840 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC21.49■■□□□ 1.03
CACNA1FO60840 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC21.49■■□□□ 1.03
CACNA1FO60840 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
CACNA1FO60840 AP002490.2-201ENST00000524791 560 ntBASIC21.49■■□□□ 1.03
CACNA1FO60840 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC21.49■■□□□ 1.03
CACNA1FO60840 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
CACNA1FO60840 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC21.49■■□□□ 1.03
CACNA1FO60840 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC21.49■■□□□ 1.03
CACNA1FO60840 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
CACNA1FO60840 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CACNA1FO60840 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CACNA1FO60840 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC21.49■■□□□ 1.03
CACNA1FO60840 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC21.49■■□□□ 1.03
CACNA1FO60840 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CACNA1FO60840 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC21.49■■□□□ 1.03
CACNA1FO60840 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CACNA1FO60840 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC21.48■■□□□ 1.03
CACNA1FO60840 AL135744.1-201ENST00000565098 629 ntBASIC21.48■■□□□ 1.03
CACNA1FO60840 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC21.48■■□□□ 1.03
CACNA1FO60840 CITED2-204ENST00000618718 901 ntTSL 2 BASIC21.48■■□□□ 1.03
CACNA1FO60840 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC21.48■■□□□ 1.03
CACNA1FO60840 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
CACNA1FO60840 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC21.48■■□□□ 1.03
CACNA1FO60840 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CACNA1FO60840 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CACNA1FO60840 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC21.48■■□□□ 1.03
CACNA1FO60840 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CACNA1FO60840 ELL2P1-201ENST00000413990 1906 ntBASIC21.48■■□□□ 1.03
CACNA1FO60840 AC012569.1-201ENST00000591191 1524 ntBASIC21.48■■□□□ 1.03
CACNA1FO60840 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CACNA1FO60840 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CACNA1FO60840 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
CACNA1FO60840 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CACNA1FO60840 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
CACNA1FO60840 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC21.48■■□□□ 1.03
CACNA1FO60840 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
CACNA1FO60840 RPP21-221ENST00000428040 594 ntTSL 2 BASIC21.48■■□□□ 1.03
CACNA1FO60840 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CACNA1FO60840 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC21.48■■□□□ 1.03
CACNA1FO60840 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC21.48■■□□□ 1.03
CACNA1FO60840 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC21.48■■□□□ 1.03
CACNA1FO60840 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC21.48■■□□□ 1.03
CACNA1FO60840 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CACNA1FO60840 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CACNA1FO60840 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
CACNA1FO60840 BCAR1-209ENST00000546196 1340 ntBASIC21.48■■□□□ 1.03
CACNA1FO60840 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CACNA1FO60840 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC21.47■■□□□ 1.03
CACNA1FO60840 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
CACNA1FO60840 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC21.47■■□□□ 1.03
CACNA1FO60840 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CACNA1FO60840 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC21.47■■□□□ 1.03
CACNA1FO60840 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC21.47■■□□□ 1.03
CACNA1FO60840 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC21.47■■□□□ 1.03
CACNA1FO60840 KRT18P13-201ENST00000400056 1290 ntBASIC21.47■■□□□ 1.03
CACNA1FO60840 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC21.47■■□□□ 1.03
CACNA1FO60840 AL139011.1-202ENST00000642063 584 ntBASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms