Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.84■□□□□ 0.29
HDAC3O15379 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HDAC3O15379 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HDAC3O15379 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HDAC3O15379 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.84■□□□□ 0.29
HDAC3O15379 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HDAC3O15379 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HDAC3O15379 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HDAC3O15379 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
HDAC3O15379 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HDAC3O15379 SPEG-225ENST00000617028 815 ntTSL 5 BASIC16.84■□□□□ 0.29
HDAC3O15379 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
HDAC3O15379 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
HDAC3O15379 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC16.84■□□□□ 0.29
HDAC3O15379 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HDAC3O15379 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HDAC3O15379 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
HDAC3O15379 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HDAC3O15379 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HDAC3O15379 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.84■□□□□ 0.29
HDAC3O15379 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HDAC3O15379 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.84■□□□□ 0.29
HDAC3O15379 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HDAC3O15379 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC16.84■□□□□ 0.29
HDAC3O15379 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
HDAC3O15379 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
HDAC3O15379 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
HDAC3O15379 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HDAC3O15379 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HDAC3O15379 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
HDAC3O15379 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HDAC3O15379 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HDAC3O15379 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HDAC3O15379 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HDAC3O15379 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HDAC3O15379 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HDAC3O15379 AC092597.1-201ENST00000487352 616 ntBASIC16.83■□□□□ 0.28
HDAC3O15379 COX11P1-201ENST00000489116 835 ntBASIC16.83■□□□□ 0.28
HDAC3O15379 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.83■□□□□ 0.28
HDAC3O15379 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC16.83■□□□□ 0.28
HDAC3O15379 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HDAC3O15379 PCDHB17P-201ENST00000539533 2393 ntBASIC16.83■□□□□ 0.28
HDAC3O15379 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC16.83■□□□□ 0.28
HDAC3O15379 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HDAC3O15379 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
HDAC3O15379 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC16.83■□□□□ 0.28
HDAC3O15379 AC008741.2-201ENST00000612792 3115 ntBASIC16.83■□□□□ 0.28
HDAC3O15379 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
HDAC3O15379 AL356309.3-201ENST00000624132 1934 ntBASIC16.83■□□□□ 0.28
HDAC3O15379 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
HDAC3O15379 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HDAC3O15379 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HDAC3O15379 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HDAC3O15379 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HDAC3O15379 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HDAC3O15379 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
HDAC3O15379 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDAC3O15379 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC16.82■□□□□ 0.28
HDAC3O15379 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDAC3O15379 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HDAC3O15379 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDAC3O15379 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC16.82■□□□□ 0.28
HDAC3O15379 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDAC3O15379 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDAC3O15379 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDAC3O15379 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
HDAC3O15379 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDAC3O15379 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC16.82■□□□□ 0.28
HDAC3O15379 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDAC3O15379 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDAC3O15379 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC16.82■□□□□ 0.28
HDAC3O15379 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC16.82■□□□□ 0.28
HDAC3O15379 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC16.82■□□□□ 0.28
HDAC3O15379 AC007967.3-201ENST00000434308 558 ntBASIC16.82■□□□□ 0.28
HDAC3O15379 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC16.82■□□□□ 0.28
HDAC3O15379 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HDAC3O15379 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
HDAC3O15379 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDAC3O15379 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDAC3O15379 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDAC3O15379 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC16.82■□□□□ 0.28
HDAC3O15379 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDAC3O15379 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HDAC3O15379 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDAC3O15379 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC16.82■□□□□ 0.28
HDAC3O15379 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HDAC3O15379 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDAC3O15379 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDAC3O15379 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDAC3O15379 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.81■□□□□ 0.28
HDAC3O15379 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC3O15379 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC3O15379 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC3O15379 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC16.81■□□□□ 0.28
HDAC3O15379 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC3O15379 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC3O15379 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC3O15379 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC16.81■□□□□ 0.28
HDAC3O15379 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC3O15379 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms