Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
PDLIM1O00151 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PDLIM1O00151 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC16.5■□□□□ 0.23
PDLIM1O00151 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PDLIM1O00151 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC16.5■□□□□ 0.23
PDLIM1O00151 NT5C-210ENST00000582160 860 ntTSL 2 BASIC16.5■□□□□ 0.23
PDLIM1O00151 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDLIM1O00151 AC006011.2-201ENST00000621313 1158 ntBASIC16.5■□□□□ 0.23
PDLIM1O00151 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDLIM1O00151 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC16.5■□□□□ 0.23
PDLIM1O00151 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
PDLIM1O00151 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDLIM1O00151 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PDLIM1O00151 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDLIM1O00151 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDLIM1O00151 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDLIM1O00151 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC16.5■□□□□ 0.23
PDLIM1O00151 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC16.5■□□□□ 0.23
PDLIM1O00151 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDLIM1O00151 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDLIM1O00151 AC116353.5-201ENST00000638148 1699 ntBASIC16.5■□□□□ 0.23
PDLIM1O00151 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDLIM1O00151 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM1O00151 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM1O00151 RNF216P1-203ENST00000404404 2427 ntBASIC16.49■□□□□ 0.23
PDLIM1O00151 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM1O00151 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC16.49■□□□□ 0.23
PDLIM1O00151 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM1O00151 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
PDLIM1O00151 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM1O00151 RHBDF1P1-201ENST00000427504 1941 ntBASIC16.49■□□□□ 0.23
PDLIM1O00151 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM1O00151 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM1O00151 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
PDLIM1O00151 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM1O00151 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
PDLIM1O00151 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM1O00151 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM1O00151 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC16.49■□□□□ 0.23
PDLIM1O00151 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
PDLIM1O00151 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC16.49■□□□□ 0.23
PDLIM1O00151 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM1O00151 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
PDLIM1O00151 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC16.49■□□□□ 0.23
PDLIM1O00151 NEK4P2-201ENST00000580004 1012 ntBASIC16.49■□□□□ 0.23
PDLIM1O00151 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM1O00151 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM1O00151 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM1O00151 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
PDLIM1O00151 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
PDLIM1O00151 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM1O00151 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM1O00151 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM1O00151 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM1O00151 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM1O00151 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM1O00151 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
PDLIM1O00151 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC16.49■□□□□ 0.23
PDLIM1O00151 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
PDLIM1O00151 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM1O00151 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM1O00151 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM1O00151 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM1O00151 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM1O00151 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC16.49■□□□□ 0.23
PDLIM1O00151 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM1O00151 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM1O00151 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC16.49■□□□□ 0.23
PDLIM1O00151 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM1O00151 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM1O00151 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM1O00151 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM1O00151 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM1O00151 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM1O00151 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM1O00151 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC16.49■□□□□ 0.23
PDLIM1O00151 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PDLIM1O00151 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PDLIM1O00151 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC16.48■□□□□ 0.23
PDLIM1O00151 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PDLIM1O00151 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
PDLIM1O00151 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PDLIM1O00151 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
PDLIM1O00151 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
PDLIM1O00151 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PDLIM1O00151 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PDLIM1O00151 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PDLIM1O00151 CD70-202ENST00000423145 881 ntTSL 2 BASIC16.48■□□□□ 0.23
PDLIM1O00151 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC16.48■□□□□ 0.23
PDLIM1O00151 AC104076.2-201ENST00000448912 469 ntBASIC16.48■□□□□ 0.23
PDLIM1O00151 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PDLIM1O00151 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PDLIM1O00151 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC16.48■□□□□ 0.23
PDLIM1O00151 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PDLIM1O00151 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
PDLIM1O00151 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC16.48■□□□□ 0.23
PDLIM1O00151 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PDLIM1O00151 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PDLIM1O00151 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
PDLIM1O00151 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms