Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM49D1C9J1S8 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM49D1C9J1S8 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
TRIM49D1C9J1S8 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC17.34■□□□□ 0.37
TRIM49D1C9J1S8 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM49D1C9J1S8 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM49D1C9J1S8 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM49D1C9J1S8 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM49D1C9J1S8 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM49D1C9J1S8 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM49D1C9J1S8 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM49D1C9J1S8 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM49D1C9J1S8 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM49D1C9J1S8 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM49D1C9J1S8 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM49D1C9J1S8 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM49D1C9J1S8 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC17.34■□□□□ 0.37
TRIM49D1C9J1S8 AC117947.1-201ENST00000427448 529 ntBASIC17.34■□□□□ 0.37
TRIM49D1C9J1S8 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM49D1C9J1S8 BX664615.1-201ENST00000443558 458 ntBASIC17.34■□□□□ 0.37
TRIM49D1C9J1S8 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.34■□□□□ 0.37
TRIM49D1C9J1S8 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM49D1C9J1S8 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
TRIM49D1C9J1S8 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.34■□□□□ 0.37
TRIM49D1C9J1S8 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM49D1C9J1S8 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC17.34■□□□□ 0.37
TRIM49D1C9J1S8 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC17.34■□□□□ 0.37
TRIM49D1C9J1S8 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC17.34■□□□□ 0.37
TRIM49D1C9J1S8 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC17.34■□□□□ 0.37
TRIM49D1C9J1S8 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC17.34■□□□□ 0.37
TRIM49D1C9J1S8 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC17.34■□□□□ 0.37
TRIM49D1C9J1S8 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM49D1C9J1S8 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM49D1C9J1S8 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM49D1C9J1S8 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC17.34■□□□□ 0.37
TRIM49D1C9J1S8 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
TRIM49D1C9J1S8 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM49D1C9J1S8 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC17.33■□□□□ 0.37
TRIM49D1C9J1S8 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM49D1C9J1S8 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM49D1C9J1S8 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM49D1C9J1S8 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC17.33■□□□□ 0.37
TRIM49D1C9J1S8 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC17.33■□□□□ 0.37
TRIM49D1C9J1S8 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM49D1C9J1S8 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM49D1C9J1S8 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC17.33■□□□□ 0.37
TRIM49D1C9J1S8 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
TRIM49D1C9J1S8 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM49D1C9J1S8 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
TRIM49D1C9J1S8 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
TRIM49D1C9J1S8 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM49D1C9J1S8 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM49D1C9J1S8 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM49D1C9J1S8 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM49D1C9J1S8 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
TRIM49D1C9J1S8 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM49D1C9J1S8 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM49D1C9J1S8 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM49D1C9J1S8 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC17.33■□□□□ 0.36
TRIM49D1C9J1S8 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC17.33■□□□□ 0.36
TRIM49D1C9J1S8 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM49D1C9J1S8 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM49D1C9J1S8 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM49D1C9J1S8 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM49D1C9J1S8 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC17.33■□□□□ 0.36
TRIM49D1C9J1S8 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM49D1C9J1S8 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC17.33■□□□□ 0.36
TRIM49D1C9J1S8 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM49D1C9J1S8 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM49D1C9J1S8 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM49D1C9J1S8 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM49D1C9J1S8 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM49D1C9J1S8 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC17.32■□□□□ 0.36
TRIM49D1C9J1S8 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM49D1C9J1S8 EGFEM1P-202ENST00000431685 1563 ntBASIC17.32■□□□□ 0.36
TRIM49D1C9J1S8 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
TRIM49D1C9J1S8 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM49D1C9J1S8 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
TRIM49D1C9J1S8 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC17.32■□□□□ 0.36
TRIM49D1C9J1S8 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC17.32■□□□□ 0.36
TRIM49D1C9J1S8 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
TRIM49D1C9J1S8 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC17.32■□□□□ 0.36
TRIM49D1C9J1S8 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM49D1C9J1S8 UBC-206ENST00000538617 1303 ntTSL 5 BASIC17.32■□□□□ 0.36
TRIM49D1C9J1S8 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC17.32■□□□□ 0.36
TRIM49D1C9J1S8 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM49D1C9J1S8 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM49D1C9J1S8 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
TRIM49D1C9J1S8 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.32■□□□□ 0.36
TRIM49D1C9J1S8 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC17.32■□□□□ 0.36
TRIM49D1C9J1S8 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC17.32■□□□□ 0.36
TRIM49D1C9J1S8 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
TRIM49D1C9J1S8 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM49D1C9J1S8 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC17.32■□□□□ 0.36
TRIM49D1C9J1S8 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC17.32■□□□□ 0.36
TRIM49D1C9J1S8 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC17.32■□□□□ 0.36
TRIM49D1C9J1S8 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM49D1C9J1S8 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM49D1C9J1S8 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM49D1C9J1S8 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms