Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC18.44■□□□□ 0.54
SMIM28A0A1B0GU29 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC18.44■□□□□ 0.54
SMIM28A0A1B0GU29 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SMIM28A0A1B0GU29 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC18.44■□□□□ 0.54
SMIM28A0A1B0GU29 AC007064.4-201ENST00000637740 555 ntBASIC18.44■□□□□ 0.54
SMIM28A0A1B0GU29 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
SMIM28A0A1B0GU29 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SMIM28A0A1B0GU29 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SMIM28A0A1B0GU29 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
SMIM28A0A1B0GU29 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SMIM28A0A1B0GU29 CYP51A1P2-201ENST00000419457 1499 ntBASIC18.44■□□□□ 0.54
SMIM28A0A1B0GU29 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.44■□□□□ 0.54
SMIM28A0A1B0GU29 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
SMIM28A0A1B0GU29 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.44■□□□□ 0.54
SMIM28A0A1B0GU29 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC18.44■□□□□ 0.54
SMIM28A0A1B0GU29 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
SMIM28A0A1B0GU29 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC18.43■□□□□ 0.54
SMIM28A0A1B0GU29 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC18.43■□□□□ 0.54
SMIM28A0A1B0GU29 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
SMIM28A0A1B0GU29 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SMIM28A0A1B0GU29 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
SMIM28A0A1B0GU29 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SMIM28A0A1B0GU29 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SMIM28A0A1B0GU29 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC18.43■□□□□ 0.54
SMIM28A0A1B0GU29 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC18.43■□□□□ 0.54
SMIM28A0A1B0GU29 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
SMIM28A0A1B0GU29 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SMIM28A0A1B0GU29 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SMIM28A0A1B0GU29 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
SMIM28A0A1B0GU29 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
SMIM28A0A1B0GU29 COA5-202ENST00000409997 557 ntTSL 4 BASIC18.43■□□□□ 0.54
SMIM28A0A1B0GU29 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC18.43■□□□□ 0.54
SMIM28A0A1B0GU29 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC18.43■□□□□ 0.54
SMIM28A0A1B0GU29 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC18.43■□□□□ 0.54
SMIM28A0A1B0GU29 SMN2-210ENST00000511812 867 ntTSL 2 BASIC18.43■□□□□ 0.54
SMIM28A0A1B0GU29 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC18.43■□□□□ 0.54
SMIM28A0A1B0GU29 AC107918.2-201ENST00000530817 355 ntBASIC18.43■□□□□ 0.54
SMIM28A0A1B0GU29 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
SMIM28A0A1B0GU29 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SMIM28A0A1B0GU29 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC18.43■□□□□ 0.54
SMIM28A0A1B0GU29 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
SMIM28A0A1B0GU29 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
SMIM28A0A1B0GU29 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SMIM28A0A1B0GU29 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SMIM28A0A1B0GU29 LINC00896-202ENST00000609602 2128 ntBASIC18.43■□□□□ 0.54
SMIM28A0A1B0GU29 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SMIM28A0A1B0GU29 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC18.42■□□□□ 0.54
SMIM28A0A1B0GU29 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SMIM28A0A1B0GU29 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
SMIM28A0A1B0GU29 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SMIM28A0A1B0GU29 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SMIM28A0A1B0GU29 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.42■□□□□ 0.54
SMIM28A0A1B0GU29 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
SMIM28A0A1B0GU29 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC18.42■□□□□ 0.54
SMIM28A0A1B0GU29 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC18.42■□□□□ 0.54
SMIM28A0A1B0GU29 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC18.42■□□□□ 0.54
SMIM28A0A1B0GU29 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC18.42■□□□□ 0.54
SMIM28A0A1B0GU29 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
SMIM28A0A1B0GU29 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC18.42■□□□□ 0.54
SMIM28A0A1B0GU29 AC005829.1-201ENST00000570002 483 ntBASIC18.42■□□□□ 0.54
SMIM28A0A1B0GU29 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC18.42■□□□□ 0.54
SMIM28A0A1B0GU29 AL691403.2-201ENST00000618460 490 ntBASIC18.42■□□□□ 0.54
SMIM28A0A1B0GU29 C20orf181-201ENST00000623918 480 ntBASIC18.42■□□□□ 0.54
SMIM28A0A1B0GU29 CROCCP2-202ENST00000412962 2773 ntBASIC18.42■□□□□ 0.54
SMIM28A0A1B0GU29 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC18.42■□□□□ 0.54
SMIM28A0A1B0GU29 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SMIM28A0A1B0GU29 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
SMIM28A0A1B0GU29 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC18.42■□□□□ 0.54
SMIM28A0A1B0GU29 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SMIM28A0A1B0GU29 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SMIM28A0A1B0GU29 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
SMIM28A0A1B0GU29 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
SMIM28A0A1B0GU29 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SMIM28A0A1B0GU29 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SMIM28A0A1B0GU29 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
SMIM28A0A1B0GU29 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC18.42■□□□□ 0.54
SMIM28A0A1B0GU29 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SMIM28A0A1B0GU29 HTR7P1-202ENST00000624664 4411 ntBASIC18.41■□□□□ 0.54
SMIM28A0A1B0GU29 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SMIM28A0A1B0GU29 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.41■□□□□ 0.54
SMIM28A0A1B0GU29 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SMIM28A0A1B0GU29 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
SMIM28A0A1B0GU29 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
SMIM28A0A1B0GU29 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
SMIM28A0A1B0GU29 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SMIM28A0A1B0GU29 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SMIM28A0A1B0GU29 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
SMIM28A0A1B0GU29 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SMIM28A0A1B0GU29 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SMIM28A0A1B0GU29 AL513480.1-201ENST00000451731 511 ntBASIC18.41■□□□□ 0.54
SMIM28A0A1B0GU29 AC074386.1-202ENST00000463561 864 ntBASIC18.41■□□□□ 0.54
SMIM28A0A1B0GU29 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC18.41■□□□□ 0.54
SMIM28A0A1B0GU29 REXO1L3P-201ENST00000622202 1288 ntBASIC18.41■□□□□ 0.54
SMIM28A0A1B0GU29 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC18.41■□□□□ 0.54
SMIM28A0A1B0GU29 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
SMIM28A0A1B0GU29 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SMIM28A0A1B0GU29 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SMIM28A0A1B0GU29 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SMIM28A0A1B0GU29 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SMIM28A0A1B0GU29 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms