Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
AP4E1Q9UPM8 EGFEM1P-202ENST00000431685 1563 ntBASIC17.96■□□□□ 0.46
AP4E1Q9UPM8 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.96■□□□□ 0.46
AP4E1Q9UPM8 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
AP4E1Q9UPM8 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.95■□□□□ 0.46
AP4E1Q9UPM8 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
AP4E1Q9UPM8 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
AP4E1Q9UPM8 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
AP4E1Q9UPM8 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
AP4E1Q9UPM8 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
AP4E1Q9UPM8 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC17.95■□□□□ 0.46
AP4E1Q9UPM8 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
AP4E1Q9UPM8 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
AP4E1Q9UPM8 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
AP4E1Q9UPM8 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
AP4E1Q9UPM8 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
AP4E1Q9UPM8 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
AP4E1Q9UPM8 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
AP4E1Q9UPM8 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
AP4E1Q9UPM8 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC17.95■□□□□ 0.46
AP4E1Q9UPM8 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC17.95■□□□□ 0.46
AP4E1Q9UPM8 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
AP4E1Q9UPM8 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
AP4E1Q9UPM8 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC17.95■□□□□ 0.46
AP4E1Q9UPM8 CYB561-217ENST00000582997 877 ntTSL 5 BASIC17.95■□□□□ 0.46
AP4E1Q9UPM8 AL139288.1-201ENST00000623748 933 ntBASIC17.95■□□□□ 0.46
AP4E1Q9UPM8 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
AP4E1Q9UPM8 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
AP4E1Q9UPM8 AL356309.3-201ENST00000624132 1934 ntBASIC17.95■□□□□ 0.46
AP4E1Q9UPM8 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
AP4E1Q9UPM8 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC17.95■□□□□ 0.46
AP4E1Q9UPM8 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
AP4E1Q9UPM8 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
AP4E1Q9UPM8 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
AP4E1Q9UPM8 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.95■□□□□ 0.46
AP4E1Q9UPM8 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
AP4E1Q9UPM8 AC097637.2-201ENST00000624096 1997 ntBASIC17.95■□□□□ 0.46
AP4E1Q9UPM8 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
AP4E1Q9UPM8 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
AP4E1Q9UPM8 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
AP4E1Q9UPM8 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
AP4E1Q9UPM8 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 ACTG1P4-201ENST00000425123 1122 ntBASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 DUSP5P1-201ENST00000441325 1139 ntBASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 SAPCD2P3-201ENST00000455031 850 ntBASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 NKAPP1-205ENST00000585790 367 ntBASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
AP4E1Q9UPM8 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
AP4E1Q9UPM8 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
AP4E1Q9UPM8 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
AP4E1Q9UPM8 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
AP4E1Q9UPM8 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
AP4E1Q9UPM8 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC17.93■□□□□ 0.46
AP4E1Q9UPM8 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC17.93■□□□□ 0.46
AP4E1Q9UPM8 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
AP4E1Q9UPM8 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
AP4E1Q9UPM8 AC060834.1-201ENST00000443027 2032 ntBASIC17.93■□□□□ 0.46
AP4E1Q9UPM8 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
AP4E1Q9UPM8 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
AP4E1Q9UPM8 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
AP4E1Q9UPM8 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
AP4E1Q9UPM8 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
AP4E1Q9UPM8 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms