Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC19.78■□□□□ 0.76
USP28Q96RU2 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
USP28Q96RU2 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
USP28Q96RU2 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
USP28Q96RU2 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
USP28Q96RU2 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
USP28Q96RU2 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC19.78■□□□□ 0.76
USP28Q96RU2 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
USP28Q96RU2 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC19.77■□□□□ 0.76
USP28Q96RU2 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC19.77■□□□□ 0.76
USP28Q96RU2 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
USP28Q96RU2 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC19.77■□□□□ 0.76
USP28Q96RU2 RCN1P2-201ENST00000398357 915 ntBASIC19.77■□□□□ 0.76
USP28Q96RU2 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
USP28Q96RU2 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
USP28Q96RU2 NKTR-203ENST00000442970 646 ntTSL 2 BASIC19.77■□□□□ 0.76
USP28Q96RU2 KRT17P6-201ENST00000453795 1220 ntBASIC19.77■□□□□ 0.76
USP28Q96RU2 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
USP28Q96RU2 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC19.77■□□□□ 0.76
USP28Q96RU2 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC19.77■□□□□ 0.76
USP28Q96RU2 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC19.77■□□□□ 0.76
USP28Q96RU2 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC19.77■□□□□ 0.76
USP28Q96RU2 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
USP28Q96RU2 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
USP28Q96RU2 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC19.77■□□□□ 0.76
USP28Q96RU2 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
USP28Q96RU2 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
USP28Q96RU2 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.75
USP28Q96RU2 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
USP28Q96RU2 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
USP28Q96RU2 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.75
USP28Q96RU2 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
USP28Q96RU2 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
USP28Q96RU2 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
USP28Q96RU2 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
USP28Q96RU2 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC19.76■□□□□ 0.75
USP28Q96RU2 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
USP28Q96RU2 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC19.76■□□□□ 0.75
USP28Q96RU2 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
USP28Q96RU2 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC19.76■□□□□ 0.75
USP28Q96RU2 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
USP28Q96RU2 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
USP28Q96RU2 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC19.76■□□□□ 0.75
USP28Q96RU2 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
USP28Q96RU2 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
USP28Q96RU2 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC19.76■□□□□ 0.75
USP28Q96RU2 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
USP28Q96RU2 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC19.76■□□□□ 0.75
USP28Q96RU2 PMPCAP1-201ENST00000508114 1576 ntBASIC19.76■□□□□ 0.75
USP28Q96RU2 IER3-202ENST00000376377 1350 ntBASIC19.76■□□□□ 0.75
USP28Q96RU2 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
USP28Q96RU2 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC19.76■□□□□ 0.75
USP28Q96RU2 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC19.76■□□□□ 0.75
USP28Q96RU2 AC096582.2-201ENST00000510860 516 ntBASIC19.76■□□□□ 0.75
USP28Q96RU2 MIR3180-1-201ENST00000580374 94 ntBASIC19.76■□□□□ 0.75
USP28Q96RU2 MIR3180-3-201ENST00000584616 94 ntBASIC19.76■□□□□ 0.75
USP28Q96RU2 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
USP28Q96RU2 Z69720.1-201ENST00000601483 472 ntBASIC19.76■□□□□ 0.75
USP28Q96RU2 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC19.76■□□□□ 0.75
USP28Q96RU2 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
USP28Q96RU2 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
USP28Q96RU2 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC19.76■□□□□ 0.75
USP28Q96RU2 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
USP28Q96RU2 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
USP28Q96RU2 AC148477.5-201ENST00000625164 1645 ntBASIC19.76■□□□□ 0.75
USP28Q96RU2 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
USP28Q96RU2 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC19.76■□□□□ 0.75
USP28Q96RU2 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
USP28Q96RU2 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC19.76■□□□□ 0.75
USP28Q96RU2 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
USP28Q96RU2 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
USP28Q96RU2 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
USP28Q96RU2 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
USP28Q96RU2 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC19.75■□□□□ 0.75
USP28Q96RU2 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP28Q96RU2 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC19.75■□□□□ 0.75
USP28Q96RU2 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
USP28Q96RU2 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
USP28Q96RU2 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP28Q96RU2 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC19.75■□□□□ 0.75
USP28Q96RU2 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC19.75■□□□□ 0.75
USP28Q96RU2 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC19.75■□□□□ 0.75
USP28Q96RU2 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC19.75■□□□□ 0.75
USP28Q96RU2 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP28Q96RU2 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC19.75■□□□□ 0.75
USP28Q96RU2 LINC00265-3P-201ENST00000447588 903 ntBASIC19.75■□□□□ 0.75
USP28Q96RU2 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
USP28Q96RU2 AC087388.1-201ENST00000571370 1112 ntBASIC19.75■□□□□ 0.75
USP28Q96RU2 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC19.75■□□□□ 0.75
USP28Q96RU2 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC19.75■□□□□ 0.75
USP28Q96RU2 CES3-203ENST00000543856 3178 ntTSL 2 BASIC19.75■□□□□ 0.75
USP28Q96RU2 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
USP28Q96RU2 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP28Q96RU2 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP28Q96RU2 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP28Q96RU2 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC19.75■□□□□ 0.75
USP28Q96RU2 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC19.75■□□□□ 0.75
USP28Q96RU2 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP28Q96RU2 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
USP28Q96RU2 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms