Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
SMC1BQ8NDV3 AC092506.1-202ENST00000401022 528 ntBASIC20.36■□□□□ 0.85
SMC1BQ8NDV3 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC20.36■□□□□ 0.85
SMC1BQ8NDV3 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC20.36■□□□□ 0.85
SMC1BQ8NDV3 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC20.36■□□□□ 0.85
SMC1BQ8NDV3 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC20.36■□□□□ 0.85
SMC1BQ8NDV3 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC20.36■□□□□ 0.85
SMC1BQ8NDV3 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
SMC1BQ8NDV3 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC20.36■□□□□ 0.85
SMC1BQ8NDV3 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
SMC1BQ8NDV3 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC20.36■□□□□ 0.85
SMC1BQ8NDV3 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC20.36■□□□□ 0.85
SMC1BQ8NDV3 MIR4538-201ENST00000581377 78 ntBASIC20.36■□□□□ 0.85
SMC1BQ8NDV3 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
SMC1BQ8NDV3 AC008738.7-201ENST00000609744 511 ntBASIC20.36■□□□□ 0.85
SMC1BQ8NDV3 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SMC1BQ8NDV3 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
SMC1BQ8NDV3 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SMC1BQ8NDV3 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC20.36■□□□□ 0.85
SMC1BQ8NDV3 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC20.36■□□□□ 0.85
SMC1BQ8NDV3 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC20.36■□□□□ 0.85
SMC1BQ8NDV3 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC20.36■□□□□ 0.85
SMC1BQ8NDV3 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SMC1BQ8NDV3 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMC1BQ8NDV3 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMC1BQ8NDV3 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC20.35■□□□□ 0.85
SMC1BQ8NDV3 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC20.35■□□□□ 0.85
SMC1BQ8NDV3 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC20.35■□□□□ 0.85
SMC1BQ8NDV3 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMC1BQ8NDV3 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SMC1BQ8NDV3 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMC1BQ8NDV3 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMC1BQ8NDV3 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMC1BQ8NDV3 AC087499.6-201ENST00000411576 835 ntBASIC20.35■□□□□ 0.85
SMC1BQ8NDV3 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SMC1BQ8NDV3 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
SMC1BQ8NDV3 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC20.35■□□□□ 0.85
SMC1BQ8NDV3 DFFBP1-201ENST00000433250 979 ntBASIC20.35■□□□□ 0.85
SMC1BQ8NDV3 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC20.35■□□□□ 0.85
SMC1BQ8NDV3 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
SMC1BQ8NDV3 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC20.35■□□□□ 0.85
SMC1BQ8NDV3 HLA-V-204ENST00000476601 1289 ntBASIC20.35■□□□□ 0.85
SMC1BQ8NDV3 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC20.35■□□□□ 0.85
SMC1BQ8NDV3 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC20.35■□□□□ 0.85
SMC1BQ8NDV3 AL512343.1-201ENST00000605837 169 ntBASIC20.35■□□□□ 0.85
SMC1BQ8NDV3 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SMC1BQ8NDV3 COX11-210ENST00000639671 696 ntBASIC20.35■□□□□ 0.85
SMC1BQ8NDV3 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMC1BQ8NDV3 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC20.35■□□□□ 0.85
SMC1BQ8NDV3 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMC1BQ8NDV3 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SMC1BQ8NDV3 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC20.35■□□□□ 0.85
SMC1BQ8NDV3 AC087289.5-201ENST00000586076 3175 ntBASIC20.35■□□□□ 0.85
SMC1BQ8NDV3 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC20.35■□□□□ 0.85
SMC1BQ8NDV3 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMC1BQ8NDV3 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMC1BQ8NDV3 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SMC1BQ8NDV3 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMC1BQ8NDV3 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMC1BQ8NDV3 AL391825.1-201ENST00000457671 1364 ntBASIC20.34■□□□□ 0.85
SMC1BQ8NDV3 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SMC1BQ8NDV3 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
SMC1BQ8NDV3 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.34■□□□□ 0.85
SMC1BQ8NDV3 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SMC1BQ8NDV3 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
SMC1BQ8NDV3 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SMC1BQ8NDV3 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
SMC1BQ8NDV3 AC125437.2-201ENST00000625180 2167 ntBASIC20.34■□□□□ 0.85
SMC1BQ8NDV3 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC20.34■□□□□ 0.85
SMC1BQ8NDV3 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SMC1BQ8NDV3 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC20.34■□□□□ 0.85
SMC1BQ8NDV3 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC20.34■□□□□ 0.85
SMC1BQ8NDV3 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC20.34■□□□□ 0.85
SMC1BQ8NDV3 AC027307.2-201ENST00000591252 911 ntBASIC20.34■□□□□ 0.85
SMC1BQ8NDV3 GPR182-203ENST00000622922 591 ntBASIC20.34■□□□□ 0.85
SMC1BQ8NDV3 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
SMC1BQ8NDV3 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC20.34■□□□□ 0.85
SMC1BQ8NDV3 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SMC1BQ8NDV3 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
SMC1BQ8NDV3 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
SMC1BQ8NDV3 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC20.34■□□□□ 0.85
SMC1BQ8NDV3 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.34■□□□□ 0.85
SMC1BQ8NDV3 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC20.34■□□□□ 0.85
SMC1BQ8NDV3 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC20.34■□□□□ 0.85
SMC1BQ8NDV3 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
SMC1BQ8NDV3 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SMC1BQ8NDV3 AL020996.1-203ENST00000536896 2307 ntBASIC20.33■□□□□ 0.85
SMC1BQ8NDV3 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SMC1BQ8NDV3 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SMC1BQ8NDV3 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC20.33■□□□□ 0.85
SMC1BQ8NDV3 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SMC1BQ8NDV3 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
SMC1BQ8NDV3 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SMC1BQ8NDV3 HMGA1P7-201ENST00000406908 502 ntBASIC20.33■□□□□ 0.85
SMC1BQ8NDV3 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC20.33■□□□□ 0.85
SMC1BQ8NDV3 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SMC1BQ8NDV3 KRT223P-202ENST00000449164 1292 ntBASIC20.33■□□□□ 0.85
SMC1BQ8NDV3 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SMC1BQ8NDV3 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC20.33■□□□□ 0.85
SMC1BQ8NDV3 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC20.33■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms