Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SLC44A3Q8N4M1 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
SLC44A3Q8N4M1 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.62■□□□□ 0.41
SLC44A3Q8N4M1 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
SLC44A3Q8N4M1 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SLC44A3Q8N4M1 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SLC44A3Q8N4M1 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SLC44A3Q8N4M1 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC17.62■□□□□ 0.41
SLC44A3Q8N4M1 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SLC44A3Q8N4M1 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.62■□□□□ 0.41
SLC44A3Q8N4M1 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC17.62■□□□□ 0.41
SLC44A3Q8N4M1 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC17.61■□□□□ 0.41
SLC44A3Q8N4M1 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC17.61■□□□□ 0.41
SLC44A3Q8N4M1 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SLC44A3Q8N4M1 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
SLC44A3Q8N4M1 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
SLC44A3Q8N4M1 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SLC44A3Q8N4M1 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.61■□□□□ 0.41
SLC44A3Q8N4M1 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC17.61■□□□□ 0.41
SLC44A3Q8N4M1 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
SLC44A3Q8N4M1 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
SLC44A3Q8N4M1 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC17.61■□□□□ 0.41
SLC44A3Q8N4M1 BAD-202ENST00000394531 631 ntTSL 3 BASIC17.61■□□□□ 0.41
SLC44A3Q8N4M1 TREML5P-201ENST00000421694 576 ntBASIC17.61■□□□□ 0.41
SLC44A3Q8N4M1 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC17.61■□□□□ 0.41
SLC44A3Q8N4M1 FAM207CP-201ENST00000443486 507 ntBASIC17.61■□□□□ 0.41
SLC44A3Q8N4M1 GAPDHP21-201ENST00000450301 1010 ntBASIC17.61■□□□□ 0.41
SLC44A3Q8N4M1 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC17.61■□□□□ 0.41
SLC44A3Q8N4M1 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC17.61■□□□□ 0.41
SLC44A3Q8N4M1 AC107918.2-201ENST00000530817 355 ntBASIC17.61■□□□□ 0.41
SLC44A3Q8N4M1 SLC25A39P2-201ENST00000537614 270 ntBASIC17.61■□□□□ 0.41
SLC44A3Q8N4M1 BAD-207ENST00000544785 525 ntTSL 3 BASIC17.61■□□□□ 0.41
SLC44A3Q8N4M1 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC17.61■□□□□ 0.41
SLC44A3Q8N4M1 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC17.61■□□□□ 0.41
SLC44A3Q8N4M1 LINC01225-203ENST00000563550 1244 ntBASIC17.61■□□□□ 0.41
SLC44A3Q8N4M1 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC17.61■□□□□ 0.41
SLC44A3Q8N4M1 AC008761.3-201ENST00000624803 892 ntBASIC17.61■□□□□ 0.41
SLC44A3Q8N4M1 RAB34-224ENST00000636513 888 ntTSL 5 BASIC17.61■□□□□ 0.41
SLC44A3Q8N4M1 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
SLC44A3Q8N4M1 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.61■□□□□ 0.41
SLC44A3Q8N4M1 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
SLC44A3Q8N4M1 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC17.61■□□□□ 0.41
SLC44A3Q8N4M1 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SLC44A3Q8N4M1 AC008677.1-201ENST00000519230 1561 ntBASIC17.61■□□□□ 0.41
SLC44A3Q8N4M1 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SLC44A3Q8N4M1 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC17.61■□□□□ 0.41
SLC44A3Q8N4M1 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC17.61■□□□□ 0.41
SLC44A3Q8N4M1 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
SLC44A3Q8N4M1 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SLC44A3Q8N4M1 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SLC44A3Q8N4M1 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
SLC44A3Q8N4M1 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.6■□□□□ 0.41
SLC44A3Q8N4M1 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SLC44A3Q8N4M1 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SLC44A3Q8N4M1 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SLC44A3Q8N4M1 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SLC44A3Q8N4M1 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SLC44A3Q8N4M1 RAC2-204ENST00000406508 893 ntTSL 5 BASIC17.6■□□□□ 0.41
SLC44A3Q8N4M1 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC17.6■□□□□ 0.41
SLC44A3Q8N4M1 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SLC44A3Q8N4M1 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC17.6■□□□□ 0.41
SLC44A3Q8N4M1 AL161645.1-201ENST00000622716 1255 ntBASIC17.6■□□□□ 0.41
SLC44A3Q8N4M1 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC17.6■□□□□ 0.41
SLC44A3Q8N4M1 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SLC44A3Q8N4M1 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC17.6■□□□□ 0.41
SLC44A3Q8N4M1 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
SLC44A3Q8N4M1 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SLC44A3Q8N4M1 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SLC44A3Q8N4M1 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SLC44A3Q8N4M1 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SLC44A3Q8N4M1 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
SLC44A3Q8N4M1 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SLC44A3Q8N4M1 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.6■□□□□ 0.41
SLC44A3Q8N4M1 REXO1L9P-201ENST00000604264 2108 ntBASIC17.6■□□□□ 0.41
SLC44A3Q8N4M1 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC17.6■□□□□ 0.41
SLC44A3Q8N4M1 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
SLC44A3Q8N4M1 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SLC44A3Q8N4M1 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SLC44A3Q8N4M1 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SLC44A3Q8N4M1 AC020763.4-201ENST00000623414 4170 ntBASIC17.59■□□□□ 0.41
SLC44A3Q8N4M1 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC17.59■□□□□ 0.41
SLC44A3Q8N4M1 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SLC44A3Q8N4M1 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC17.59■□□□□ 0.41
SLC44A3Q8N4M1 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SLC44A3Q8N4M1 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.59■□□□□ 0.41
SLC44A3Q8N4M1 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SLC44A3Q8N4M1 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.59■□□□□ 0.41
SLC44A3Q8N4M1 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SLC44A3Q8N4M1 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SLC44A3Q8N4M1 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SLC44A3Q8N4M1 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SLC44A3Q8N4M1 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC17.59■□□□□ 0.41
SLC44A3Q8N4M1 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC17.59■□□□□ 0.41
SLC44A3Q8N4M1 IGHV3-62-201ENST00000520057 340 ntBASIC17.59■□□□□ 0.41
SLC44A3Q8N4M1 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
SLC44A3Q8N4M1 MMP17-203ENST00000535004 719 ntTSL 3 BASIC17.59■□□□□ 0.41
SLC44A3Q8N4M1 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SLC44A3Q8N4M1 AC026150.2-201ENST00000564693 1156 ntBASIC17.59■□□□□ 0.41
SLC44A3Q8N4M1 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
SLC44A3Q8N4M1 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms