Protein–RNA interactions for Protein: Q5VTB9

RNF220, E3 ubiquitin-protein ligase RNF220, humanhuman

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF220Q5VTB9 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RNF220Q5VTB9 SLC9A7P1-201ENST00000554295 3311 ntBASIC16.72■□□□□ 0.27
RNF220Q5VTB9 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RNF220Q5VTB9 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RNF220Q5VTB9 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
RNF220Q5VTB9 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC16.72■□□□□ 0.27
RNF220Q5VTB9 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
RNF220Q5VTB9 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RNF220Q5VTB9 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC16.72■□□□□ 0.27
RNF220Q5VTB9 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
RNF220Q5VTB9 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC16.72■□□□□ 0.27
RNF220Q5VTB9 AC066615.1-201ENST00000640911 628 ntBASIC16.72■□□□□ 0.27
RNF220Q5VTB9 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RNF220Q5VTB9 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC16.72■□□□□ 0.27
RNF220Q5VTB9 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RNF220Q5VTB9 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RNF220Q5VTB9 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RNF220Q5VTB9 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.72■□□□□ 0.27
RNF220Q5VTB9 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RNF220Q5VTB9 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
RNF220Q5VTB9 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
RNF220Q5VTB9 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RNF220Q5VTB9 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC16.72■□□□□ 0.27
RNF220Q5VTB9 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
RNF220Q5VTB9 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RNF220Q5VTB9 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RNF220Q5VTB9 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RNF220Q5VTB9 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
RNF220Q5VTB9 TCAF2P1-201ENST00000291129 2421 ntBASIC16.71■□□□□ 0.27
RNF220Q5VTB9 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
RNF220Q5VTB9 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
RNF220Q5VTB9 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
RNF220Q5VTB9 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
RNF220Q5VTB9 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RNF220Q5VTB9 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.71■□□□□ 0.27
RNF220Q5VTB9 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC16.71■□□□□ 0.27
RNF220Q5VTB9 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RNF220Q5VTB9 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
RNF220Q5VTB9 PVRIG2P-201ENST00000435460 978 ntBASIC16.71■□□□□ 0.27
RNF220Q5VTB9 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC16.71■□□□□ 0.27
RNF220Q5VTB9 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC16.71■□□□□ 0.27
RNF220Q5VTB9 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RNF220Q5VTB9 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC16.71■□□□□ 0.27
RNF220Q5VTB9 CYP2T1P-202ENST00000641596 2535 ntBASIC16.71■□□□□ 0.27
RNF220Q5VTB9 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
RNF220Q5VTB9 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC16.71■□□□□ 0.27
RNF220Q5VTB9 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
RNF220Q5VTB9 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.26
RNF220Q5VTB9 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
RNF220Q5VTB9 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
RNF220Q5VTB9 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
RNF220Q5VTB9 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.26
RNF220Q5VTB9 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
RNF220Q5VTB9 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
RNF220Q5VTB9 KRT18P55-202ENST00000578578 1546 ntBASIC16.7■□□□□ 0.26
RNF220Q5VTB9 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RNF220Q5VTB9 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RNF220Q5VTB9 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
RNF220Q5VTB9 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
RNF220Q5VTB9 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RNF220Q5VTB9 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.7■□□□□ 0.26
RNF220Q5VTB9 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC16.7■□□□□ 0.26
RNF220Q5VTB9 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
RNF220Q5VTB9 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
RNF220Q5VTB9 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
RNF220Q5VTB9 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
RNF220Q5VTB9 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RNF220Q5VTB9 CASK-202ENST00000378158 3848 ntTSL 5 BASIC16.7■□□□□ 0.26
RNF220Q5VTB9 AC087499.1-201ENST00000418141 1075 ntBASIC16.7■□□□□ 0.26
RNF220Q5VTB9 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC16.7■□□□□ 0.26
RNF220Q5VTB9 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC16.7■□□□□ 0.26
RNF220Q5VTB9 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC16.7■□□□□ 0.26
RNF220Q5VTB9 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC16.7■□□□□ 0.26
RNF220Q5VTB9 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
RNF220Q5VTB9 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC16.7■□□□□ 0.26
RNF220Q5VTB9 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC16.7■□□□□ 0.26
RNF220Q5VTB9 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC16.7■□□□□ 0.26
RNF220Q5VTB9 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
RNF220Q5VTB9 AC141257.4-201ENST00000634557 245 ntBASIC16.7■□□□□ 0.26
RNF220Q5VTB9 AC136944.6-201ENST00000634818 245 ntBASIC16.7■□□□□ 0.26
RNF220Q5VTB9 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC16.7■□□□□ 0.26
RNF220Q5VTB9 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
RNF220Q5VTB9 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
RNF220Q5VTB9 AC092384.3-202ENST00000564646 2873 ntBASIC16.7■□□□□ 0.26
RNF220Q5VTB9 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RNF220Q5VTB9 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
RNF220Q5VTB9 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC16.7■□□□□ 0.26
RNF220Q5VTB9 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
RNF220Q5VTB9 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RNF220Q5VTB9 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
RNF220Q5VTB9 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
RNF220Q5VTB9 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RNF220Q5VTB9 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
RNF220Q5VTB9 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RNF220Q5VTB9 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
RNF220Q5VTB9 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RNF220Q5VTB9 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
RNF220Q5VTB9 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
RNF220Q5VTB9 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC16.69■□□□□ 0.26
RNF220Q5VTB9 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms