Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 SPDYE15P-201ENST00000424157 909 ntBASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 RASA4DP-201ENST00000460726 1199 ntBASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 KRT18P31-201ENST00000506277 1292 ntBASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 REEP1-209ENST00000541910 969 ntTSL 2 BASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 GCSHP2-201ENST00000560971 527 ntBASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 PMS2P7-201ENST00000506558 1336 ntBASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC14.4□□□□□ -0.1
PDLIM3Q53GG5 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.11
PDLIM3Q53GG5 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.11
PDLIM3Q53GG5 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 HBZP1-201ENST00000354915 429 ntBASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 TSPY12P-201ENST00000421279 868 ntBASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 COX10-202ENST00000429152 875 ntTSL 2 BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 PNN-202ENST00000553331 656 ntTSL 3 BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 NEK4P2-201ENST00000580004 1012 ntBASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 AC140113.2-201ENST00000604370 208 ntBASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 LINC01451-201ENST00000623792 534 ntBASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 AC100803.2-201ENST00000562459 1963 ntBASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 117.6 ms