Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC14.84□□□□□ -0.03
ABCA4P78363 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
ABCA4P78363 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
ABCA4P78363 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC14.84□□□□□ -0.03
ABCA4P78363 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ABCA4P78363 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ABCA4P78363 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC14.84□□□□□ -0.03
ABCA4P78363 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
ABCA4P78363 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ABCA4P78363 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ABCA4P78363 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ABCA4P78363 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
ABCA4P78363 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
ABCA4P78363 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ABCA4P78363 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC14.84□□□□□ -0.03
ABCA4P78363 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ABCA4P78363 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
ABCA4P78363 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
ABCA4P78363 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC14.84□□□□□ -0.03
ABCA4P78363 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
ABCA4P78363 AL590787.1-201ENST00000568856 1315 ntBASIC14.84□□□□□ -0.03
ABCA4P78363 AC063926.2-201ENST00000623766 1308 ntBASIC14.84□□□□□ -0.03
ABCA4P78363 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
ABCA4P78363 AC006116.8-202ENST00000587620 1550 ntBASIC14.84□□□□□ -0.03
ABCA4P78363 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC14.84□□□□□ -0.03
ABCA4P78363 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
ABCA4P78363 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
ABCA4P78363 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
ABCA4P78363 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
ABCA4P78363 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.03
ABCA4P78363 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC14.83□□□□□ -0.03
ABCA4P78363 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC14.83□□□□□ -0.03
ABCA4P78363 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC14.83□□□□□ -0.03
ABCA4P78363 ACTL9-202ENST00000612068 1252 ntBASIC14.83□□□□□ -0.03
ABCA4P78363 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
ABCA4P78363 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.03
ABCA4P78363 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
ABCA4P78363 AC009113.1-201ENST00000570267 2443 ntBASIC14.83□□□□□ -0.03
ABCA4P78363 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
ABCA4P78363 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
ABCA4P78363 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC14.83□□□□□ -0.03
ABCA4P78363 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.03
ABCA4P78363 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.03
ABCA4P78363 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
ABCA4P78363 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC14.83□□□□□ -0.04
ABCA4P78363 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
ABCA4P78363 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC14.83□□□□□ -0.04
ABCA4P78363 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
ABCA4P78363 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
ABCA4P78363 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC14.83□□□□□ -0.04
ABCA4P78363 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC14.83□□□□□ -0.04
ABCA4P78363 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
ABCA4P78363 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC14.83□□□□□ -0.04
ABCA4P78363 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC14.83□□□□□ -0.04
ABCA4P78363 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC14.83□□□□□ -0.04
ABCA4P78363 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
ABCA4P78363 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
ABCA4P78363 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
ABCA4P78363 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC14.83□□□□□ -0.04
ABCA4P78363 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC14.83□□□□□ -0.04
ABCA4P78363 FAM185BP-201ENST00000443595 716 ntBASIC14.83□□□□□ -0.04
ABCA4P78363 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.04
ABCA4P78363 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC14.83□□□□□ -0.04
ABCA4P78363 RN7SL204P-201ENST00000582831 262 ntBASIC14.83□□□□□ -0.04
ABCA4P78363 AC004835.2-201ENST00000603762 682 ntBASIC14.83□□□□□ -0.04
ABCA4P78363 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC14.83□□□□□ -0.04
ABCA4P78363 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC14.83□□□□□ -0.04
ABCA4P78363 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
ABCA4P78363 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC14.83□□□□□ -0.04
ABCA4P78363 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
ABCA4P78363 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
ABCA4P78363 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
ABCA4P78363 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
ABCA4P78363 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
ABCA4P78363 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
ABCA4P78363 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
ABCA4P78363 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC14.83□□□□□ -0.04
ABCA4P78363 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
ABCA4P78363 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
ABCA4P78363 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC14.83□□□□□ -0.04
ABCA4P78363 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
ABCA4P78363 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC14.82□□□□□ -0.04
ABCA4P78363 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
ABCA4P78363 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
ABCA4P78363 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
ABCA4P78363 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC14.82□□□□□ -0.04
ABCA4P78363 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC14.82□□□□□ -0.04
ABCA4P78363 AC055876.3-201ENST00000431496 288 ntBASIC14.82□□□□□ -0.04
ABCA4P78363 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
ABCA4P78363 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC14.82□□□□□ -0.04
ABCA4P78363 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC14.82□□□□□ -0.04
ABCA4P78363 AC025678.2-201ENST00000562061 970 ntBASIC14.82□□□□□ -0.04
ABCA4P78363 CYB561-216ENST00000582297 897 ntTSL 3 BASIC14.82□□□□□ -0.04
ABCA4P78363 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC14.82□□□□□ -0.04
ABCA4P78363 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC14.82□□□□□ -0.04
ABCA4P78363 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC14.82□□□□□ -0.04
ABCA4P78363 AC099522.2-201ENST00000607001 744 ntBASIC14.82□□□□□ -0.04
ABCA4P78363 AC138649.4-201ENST00000612222 287 ntBASIC14.82□□□□□ -0.04
ABCA4P78363 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC14.82□□□□□ -0.04
ABCA4P78363 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 61.6 ms