Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LMO4P61968 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC14.12□□□□□ -0.15
LMO4P61968 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LMO4P61968 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
LMO4P61968 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LMO4P61968 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC14.12□□□□□ -0.15
LMO4P61968 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
LMO4P61968 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC14.12□□□□□ -0.15
LMO4P61968 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LMO4P61968 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
LMO4P61968 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LMO4P61968 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
LMO4P61968 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LMO4P61968 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC14.12□□□□□ -0.15
LMO4P61968 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LMO4P61968 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC14.12□□□□□ -0.15
LMO4P61968 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC14.12□□□□□ -0.15
LMO4P61968 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC14.12□□□□□ -0.15
LMO4P61968 AC112191.1-201ENST00000523689 701 ntBASIC14.12□□□□□ -0.15
LMO4P61968 MMP17-203ENST00000535004 719 ntTSL 3 BASIC14.12□□□□□ -0.15
LMO4P61968 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC14.12□□□□□ -0.15
LMO4P61968 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC14.12□□□□□ -0.15
LMO4P61968 AC027612.4-201ENST00000605371 583 ntBASIC14.12□□□□□ -0.15
LMO4P61968 AL513210.1-201ENST00000629608 234 ntBASIC14.12□□□□□ -0.15
LMO4P61968 AC105339.1-204ENST00000636249 355 ntBASIC14.12□□□□□ -0.15
LMO4P61968 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC14.12□□□□□ -0.15
LMO4P61968 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
LMO4P61968 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
LMO4P61968 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
LMO4P61968 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LMO4P61968 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LMO4P61968 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
LMO4P61968 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
LMO4P61968 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC14.12□□□□□ -0.15
LMO4P61968 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LMO4P61968 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
LMO4P61968 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
LMO4P61968 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC14.12□□□□□ -0.15
LMO4P61968 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LMO4P61968 AL121761.2-201ENST00000598007 1648 ntBASIC14.12□□□□□ -0.15
LMO4P61968 NEFHP1-201ENST00000412845 2629 ntBASIC14.11□□□□□ -0.15
LMO4P61968 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
LMO4P61968 HARS-203ENST00000431330 1774 ntTSL 2 BASIC14.11□□□□□ -0.15
LMO4P61968 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC14.11□□□□□ -0.15
LMO4P61968 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
LMO4P61968 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC14.11□□□□□ -0.15
LMO4P61968 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
LMO4P61968 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC14.11□□□□□ -0.15
LMO4P61968 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
LMO4P61968 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC14.11□□□□□ -0.15
LMO4P61968 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LMO4P61968 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LMO4P61968 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LMO4P61968 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LMO4P61968 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC14.11□□□□□ -0.15
LMO4P61968 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC14.11□□□□□ -0.15
LMO4P61968 AC002056.1-201ENST00000395613 760 ntBASIC14.11□□□□□ -0.15
LMO4P61968 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
LMO4P61968 PON3-203ENST00000427422 894 ntTSL 3 BASIC14.11□□□□□ -0.15
LMO4P61968 HMGN1P19-201ENST00000436976 333 ntBASIC14.11□□□□□ -0.15
LMO4P61968 AC140658.5-201ENST00000438532 169 ntBASIC14.11□□□□□ -0.15
LMO4P61968 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
LMO4P61968 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
LMO4P61968 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC14.11□□□□□ -0.15
LMO4P61968 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC14.11□□□□□ -0.15
LMO4P61968 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
LMO4P61968 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC14.11□□□□□ -0.15
LMO4P61968 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC14.11□□□□□ -0.15
LMO4P61968 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC14.11□□□□□ -0.15
LMO4P61968 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC14.11□□□□□ -0.15
LMO4P61968 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC14.11□□□□□ -0.15
LMO4P61968 MIR4515-201ENST00000584082 81 ntBASIC14.11□□□□□ -0.15
LMO4P61968 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
LMO4P61968 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC14.11□□□□□ -0.15
LMO4P61968 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
LMO4P61968 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
LMO4P61968 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC14.11□□□□□ -0.15
LMO4P61968 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
LMO4P61968 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC14.11□□□□□ -0.15
LMO4P61968 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC14.11□□□□□ -0.15
LMO4P61968 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC14.1□□□□□ -0.15
LMO4P61968 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC14.1□□□□□ -0.15
LMO4P61968 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC14.1□□□□□ -0.15
LMO4P61968 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
LMO4P61968 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LMO4P61968 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
LMO4P61968 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC14.1□□□□□ -0.15
LMO4P61968 AC016396.2-201ENST00000562575 1417 ntBASIC14.1□□□□□ -0.15
LMO4P61968 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LMO4P61968 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC14.1□□□□□ -0.15
LMO4P61968 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
LMO4P61968 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
LMO4P61968 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LMO4P61968 AC004461.1-201ENST00000412461 403 ntBASIC14.1□□□□□ -0.15
LMO4P61968 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC14.1□□□□□ -0.15
LMO4P61968 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC14.1□□□□□ -0.15
LMO4P61968 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
LMO4P61968 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
LMO4P61968 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC14.1□□□□□ -0.15
LMO4P61968 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms