Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDH6P55285 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC18.01■□□□□ 0.47
CDH6P55285 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
CDH6P55285 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDH6P55285 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CDH6P55285 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CDH6P55285 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC18.01■□□□□ 0.47
CDH6P55285 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
CDH6P55285 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
CDH6P55285 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
CDH6P55285 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC18.01■□□□□ 0.47
CDH6P55285 SRP19-202ENST00000445150 833 ntTSL 2 BASIC18.01■□□□□ 0.47
CDH6P55285 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CDH6P55285 NMU-205ENST00000511469 756 ntTSL 3 BASIC18.01■□□□□ 0.47
CDH6P55285 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC18.01■□□□□ 0.47
CDH6P55285 FICD-205ENST00000552758 603 ntTSL 2 BASIC18.01■□□□□ 0.47
CDH6P55285 GZMM-202ENST00000592501 941 ntTSL 3 BASIC18.01■□□□□ 0.47
CDH6P55285 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CDH6P55285 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC18.01■□□□□ 0.47
CDH6P55285 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDH6P55285 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDH6P55285 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
CDH6P55285 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
CDH6P55285 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
CDH6P55285 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDH6P55285 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDH6P55285 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDH6P55285 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDH6P55285 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
CDH6P55285 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC18.01■□□□□ 0.47
CDH6P55285 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDH6P55285 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
CDH6P55285 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CDH6P55285 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18■□□□□ 0.47
CDH6P55285 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
CDH6P55285 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC18■□□□□ 0.47
CDH6P55285 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CDH6P55285 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC18■□□□□ 0.47
CDH6P55285 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CDH6P55285 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CDH6P55285 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC18■□□□□ 0.47
CDH6P55285 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CDH6P55285 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC18■□□□□ 0.47
CDH6P55285 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CDH6P55285 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC18■□□□□ 0.47
CDH6P55285 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC18■□□□□ 0.47
CDH6P55285 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC18■□□□□ 0.47
CDH6P55285 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
CDH6P55285 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC18■□□□□ 0.47
CDH6P55285 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC18■□□□□ 0.47
CDH6P55285 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC18■□□□□ 0.47
CDH6P55285 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC18■□□□□ 0.47
CDH6P55285 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC18■□□□□ 0.47
CDH6P55285 AL591684.3-201ENST00000605187 298 ntBASIC18■□□□□ 0.47
CDH6P55285 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC18■□□□□ 0.47
CDH6P55285 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC18■□□□□ 0.47
CDH6P55285 AP000867.4-201ENST00000641616 219 ntBASIC18■□□□□ 0.47
CDH6P55285 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
CDH6P55285 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CDH6P55285 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC18■□□□□ 0.47
CDH6P55285 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC18■□□□□ 0.47
CDH6P55285 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CDH6P55285 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
CDH6P55285 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CDH6P55285 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CDH6P55285 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CDH6P55285 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC18■□□□□ 0.47
CDH6P55285 AC092053.1-201ENST00000605787 1936 ntBASIC18■□□□□ 0.47
CDH6P55285 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC18■□□□□ 0.47
CDH6P55285 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CDH6P55285 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.99■□□□□ 0.47
CDH6P55285 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CDH6P55285 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CDH6P55285 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CDH6P55285 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CDH6P55285 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CDH6P55285 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
CDH6P55285 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC17.99■□□□□ 0.47
CDH6P55285 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CDH6P55285 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CDH6P55285 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CDH6P55285 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CDH6P55285 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CDH6P55285 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC17.99■□□□□ 0.47
CDH6P55285 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC17.99■□□□□ 0.47
CDH6P55285 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC17.99■□□□□ 0.47
CDH6P55285 MIR3652-201ENST00000579335 131 ntBASIC17.99■□□□□ 0.47
CDH6P55285 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC17.99■□□□□ 0.47
CDH6P55285 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC17.99■□□□□ 0.47
CDH6P55285 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC17.99■□□□□ 0.47
CDH6P55285 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.99■□□□□ 0.47
CDH6P55285 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
CDH6P55285 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.99■□□□□ 0.47
CDH6P55285 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CDH6P55285 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CDH6P55285 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC17.99■□□□□ 0.47
CDH6P55285 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC17.99■□□□□ 0.47
CDH6P55285 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CDH6P55285 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CDH6P55285 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms