Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 AC241585.1-201ENST00000433527 519 ntBASIC17.09■□□□□ 0.33
CXCL12P48061 AC109635.5-201ENST00000533593 962 ntBASIC17.09■□□□□ 0.33
CXCL12P48061 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CXCL12P48061 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC17.09■□□□□ 0.33
CXCL12P48061 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC17.09■□□□□ 0.33
CXCL12P48061 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC17.09■□□□□ 0.33
CXCL12P48061 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC17.09■□□□□ 0.33
CXCL12P48061 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CXCL12P48061 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CXCL12P48061 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CXCL12P48061 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CXCL12P48061 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CXCL12P48061 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.09■□□□□ 0.33
CXCL12P48061 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
CXCL12P48061 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CXCL12P48061 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
CXCL12P48061 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.08■□□□□ 0.33
CXCL12P48061 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CXCL12P48061 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CXCL12P48061 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CXCL12P48061 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC17.08■□□□□ 0.33
CXCL12P48061 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC17.08■□□□□ 0.32
CXCL12P48061 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CXCL12P48061 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
CXCL12P48061 WASH6P-202ENST00000359512 1437 ntBASIC17.08■□□□□ 0.32
CXCL12P48061 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
CXCL12P48061 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CXCL12P48061 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CXCL12P48061 OR8S1-201ENST00000310194 1080 ntBASIC17.08■□□□□ 0.32
CXCL12P48061 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CXCL12P48061 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CXCL12P48061 PIN1P1-201ENST00000412108 996 ntBASIC17.08■□□□□ 0.32
CXCL12P48061 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC17.08■□□□□ 0.32
CXCL12P48061 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC17.08■□□□□ 0.32
CXCL12P48061 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CXCL12P48061 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CXCL12P48061 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
CXCL12P48061 AL359881.2-201ENST00000602973 570 ntBASIC17.08■□□□□ 0.32
CXCL12P48061 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC17.08■□□□□ 0.32
CXCL12P48061 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
CXCL12P48061 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC17.08■□□□□ 0.32
CXCL12P48061 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CXCL12P48061 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
CXCL12P48061 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CXCL12P48061 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC17.07■□□□□ 0.32
CXCL12P48061 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
CXCL12P48061 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CXCL12P48061 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CXCL12P48061 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CXCL12P48061 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CXCL12P48061 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CXCL12P48061 WIZP1-201ENST00000531444 2299 ntBASIC17.07■□□□□ 0.32
CXCL12P48061 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CXCL12P48061 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CXCL12P48061 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CXCL12P48061 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CXCL12P48061 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC17.07■□□□□ 0.32
CXCL12P48061 AC092580.3-201ENST00000430932 139 ntBASIC17.07■□□□□ 0.32
CXCL12P48061 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CXCL12P48061 SERBP1P5-201ENST00000510079 1181 ntBASIC17.07■□□□□ 0.32
CXCL12P48061 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC17.07■□□□□ 0.32
CXCL12P48061 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC17.07■□□□□ 0.32
CXCL12P48061 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.07■□□□□ 0.32
CXCL12P48061 AC008267.7-201ENST00000624570 1194 ntBASIC17.07■□□□□ 0.32
CXCL12P48061 AC025048.6-201ENST00000634326 1161 ntBASIC17.07■□□□□ 0.32
CXCL12P48061 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC17.07■□□□□ 0.32
CXCL12P48061 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
CXCL12P48061 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CXCL12P48061 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CXCL12P48061 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.07■□□□□ 0.32
CXCL12P48061 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CXCL12P48061 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
CXCL12P48061 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC17.06■□□□□ 0.32
CXCL12P48061 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC17.06■□□□□ 0.32
CXCL12P48061 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CXCL12P48061 REXO1L11P-201ENST00000620964 1927 ntBASIC17.06■□□□□ 0.32
CXCL12P48061 GNAS-203ENST00000306120 1878 ntBASIC17.06■□□□□ 0.32
CXCL12P48061 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CXCL12P48061 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC17.06■□□□□ 0.32
CXCL12P48061 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC17.06■□□□□ 0.32
CXCL12P48061 AC007274.1-201ENST00000439805 662 ntBASIC17.06■□□□□ 0.32
CXCL12P48061 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
CXCL12P48061 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC17.06■□□□□ 0.32
CXCL12P48061 SSH2-211ENST00000590153 570 ntTSL 4 BASIC17.06■□□□□ 0.32
CXCL12P48061 AC009118.2-201ENST00000613275 655 ntBASIC17.06■□□□□ 0.32
CXCL12P48061 AL662799.1-202ENST00000614205 422 ntBASIC17.06■□□□□ 0.32
CXCL12P48061 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CXCL12P48061 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CXCL12P48061 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CXCL12P48061 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CXCL12P48061 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CXCL12P48061 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CXCL12P48061 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CXCL12P48061 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
CXCL12P48061 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
CXCL12P48061 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CXCL12P48061 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
CXCL12P48061 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CXCL12P48061 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.05■□□□□ 0.32
CXCL12P48061 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 65 ms