Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC17.95■□□□□ 0.46
PTPN9P43378 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
PTPN9P43378 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTPN9P43378 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
PTPN9P43378 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTPN9P43378 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.95■□□□□ 0.46
PTPN9P43378 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
PTPN9P43378 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTPN9P43378 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.95■□□□□ 0.46
PTPN9P43378 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTPN9P43378 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
PTPN9P43378 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PTPN9P43378 FRMD8P1-201ENST00000440433 1524 ntBASIC17.95■□□□□ 0.46
PTPN9P43378 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC17.95■□□□□ 0.46
PTPN9P43378 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
PTPN9P43378 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTPN9P43378 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTPN9P43378 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTPN9P43378 RAB17-203ENST00000409576 466 ntTSL 3 BASIC17.95■□□□□ 0.46
PTPN9P43378 FAAHP1-202ENST00000446499 1238 ntBASIC17.95■□□□□ 0.46
PTPN9P43378 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC17.95■□□□□ 0.46
PTPN9P43378 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC17.95■□□□□ 0.46
PTPN9P43378 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC17.95■□□□□ 0.46
PTPN9P43378 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC17.95■□□□□ 0.46
PTPN9P43378 IRF5-214ENST00000613821 595 ntTSL 5 BASIC17.95■□□□□ 0.46
PTPN9P43378 TP73-AS1-207ENST00000624167 988 ntBASIC17.95■□□□□ 0.46
PTPN9P43378 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC17.95■□□□□ 0.46
PTPN9P43378 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTPN9P43378 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PTPN9P43378 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTPN9P43378 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTPN9P43378 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTPN9P43378 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PTPN9P43378 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC17.95■□□□□ 0.46
PTPN9P43378 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTPN9P43378 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.94■□□□□ 0.46
PTPN9P43378 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC17.94■□□□□ 0.46
PTPN9P43378 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.94■□□□□ 0.46
PTPN9P43378 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC17.94■□□□□ 0.46
PTPN9P43378 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTPN9P43378 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTPN9P43378 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTPN9P43378 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTPN9P43378 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTPN9P43378 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC17.94■□□□□ 0.46
PTPN9P43378 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTPN9P43378 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTPN9P43378 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC17.94■□□□□ 0.46
PTPN9P43378 PNMT-203ENST00000581428 677 ntTSL 2 BASIC17.94■□□□□ 0.46
PTPN9P43378 AC004706.3-202ENST00000621574 984 ntBASIC17.94■□□□□ 0.46
PTPN9P43378 VPS51-217ENST00000639871 243 ntTSL 5 BASIC17.94■□□□□ 0.46
PTPN9P43378 AC107918.4-202ENST00000641623 219 ntBASIC17.94■□□□□ 0.46
PTPN9P43378 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PTPN9P43378 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC17.94■□□□□ 0.46
PTPN9P43378 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PTPN9P43378 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
PTPN9P43378 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTPN9P43378 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
PTPN9P43378 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTPN9P43378 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTPN9P43378 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTPN9P43378 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC17.93■□□□□ 0.46
PTPN9P43378 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC17.93■□□□□ 0.46
PTPN9P43378 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTPN9P43378 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
PTPN9P43378 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTPN9P43378 AC004870.1-201ENST00000315132 882 ntBASIC17.93■□□□□ 0.46
PTPN9P43378 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTPN9P43378 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC17.93■□□□□ 0.46
PTPN9P43378 AP002414.1-201ENST00000391405 1147 ntBASIC17.93■□□□□ 0.46
PTPN9P43378 NABP1-203ENST00000409510 843 ntTSL 5 BASIC17.93■□□□□ 0.46
PTPN9P43378 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC17.93■□□□□ 0.46
PTPN9P43378 LAGE3P1-201ENST00000425356 484 ntBASIC17.93■□□□□ 0.46
PTPN9P43378 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC17.93■□□□□ 0.46
PTPN9P43378 ARTN-206ENST00000472435 402 ntTSL 3 BASIC17.93■□□□□ 0.46
PTPN9P43378 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTPN9P43378 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC17.93■□□□□ 0.46
PTPN9P43378 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PTPN9P43378 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PTPN9P43378 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC17.93■□□□□ 0.46
PTPN9P43378 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.93■□□□□ 0.46
PTPN9P43378 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC17.93■□□□□ 0.46
PTPN9P43378 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PTPN9P43378 SDCCAG3P1-201ENST00000589292 1150 ntBASIC17.93■□□□□ 0.46
PTPN9P43378 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PTPN9P43378 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTPN9P43378 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.93■□□□□ 0.46
PTPN9P43378 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PTPN9P43378 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PTPN9P43378 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
PTPN9P43378 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PTPN9P43378 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
PTPN9P43378 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC17.93■□□□□ 0.46
PTPN9P43378 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTPN9P43378 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTPN9P43378 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTPN9P43378 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTPN9P43378 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC17.93■□□□□ 0.46
PTPN9P43378 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTPN9P43378 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms